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docs: fix plan/repo drift, retire dead Goose+Nomos and Caveman tooling
Documentation and repo-hygiene pass following the client/server split:

Plan drift (audited all other active plans against current code):
- oikos-gaps-and-improvements.md: mark Section C and D.5 resolved (both
  described cmd/hermes, renamed to cmd/nomos with a real LLM loop since);
  refresh ~10 stale file:line citations; fix tool-count (33, not 28).
- liveness-drift-and-ux-cohesion.md: fix stale default-model claim (now
  deepseek-v4-pro since 2026-07-10) and "not yet deployed" status.
- nomos-agent-code-review.md: fix C1's citation (one unauthenticated route
  to nomos now, not two, after the client/server split).
- wails-desktop-app.md: record the production deploy outcome.

Repo structure: added missing directories to README/CONTRIBUTING layout
tables (checks/, tools/, cmd/webhook/, docs/operations/), fixed a broken
link, added ADR 0015 documenting the auth/CORS/client-split model (there
wasn't one despite CONTRIBUTING's own process requiring it), normalized
ADR 0013/0014's format drift, added an Authentication section to
AGENTS.md/CLIENTS.md (every example call was missing the now-required
bearer header).

Retired the Goose+Nomos workstation flow (bootstrap.sh --with-nomos,
tools/setup-nomos-soul.sh, .agents/operations/nomos-agent.md) and the
Caveman auto-install tooling (tools/setup-caveman.sh, tools/caveman/) —
both superseded by the production containerized Nomos agent, which has
never used either. Kept .agents/shared/caveman.md itself (the terse
writing-style convention agents still follow by reading it).

Deleted the orphaned legacy Python oikos/ directory — nothing imports it,
and bin/homelab (the CLI it was kept for) no longer exists in the repo.

Rewrote .agents/operations/agent-enrollment.md (365 -> ~110 lines) and
commands.md to match the current architecture instead of the retired
`homelab` CLI; migrated the still-true networking prerequisites (Netbird,
split-horizon DNS, SSH key distribution) into the knowledge base as a
runbook via upsert_knowledge rather than duplicating them in markdown.
Updated all 10 .agents/skills/ runbooks referencing the dead CLI with
their real MCP tool / REST API equivalents, or flagged them as needing
verification where no equivalent is confirmed yet.

Two real bugs found and fixed, not just docs:
- The tools/setup-*.sh auto-setup glob was tools/*.setup.sh in THREE
  places (tools/post-pull.sh, bootstrap.sh, and internal/httpapi/impl.go's
  GetClientContext handler) since the mechanism's introduction on
  2026-06-02 — never matched any real filename, so no client has ever
  picked up an auto-setup script via git-pull or the context-poller sync.
  Fixed all three; the Go server-side fix is the one that actually matters
  since it's what the current context-poller mechanism depends on.
- bootstrap.sh removed dead vestigial --gitea-token/--gitea-user flags
  (parsed, never consumed) left over from an earlier clone-based model.

Also flagged, not fixed (documented as an open gap in
client-enrollment/SKILL.md): bootstrap.sh tells a freshly-enrolled client
to call POST /api/v1/clients/{slug}/activate to finish enrollment, but
that route doesn't exist in api/openapi.yaml — EnrollClient sets entities
to provisioning and nothing currently transitions them to active.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
2026-07-12 18:19:41 +02:00

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# Architecture Decision Records
MADR-style records for Oikos. One decision per file, numbered, never edited
after acceptance — superseding decisions get a new ADR that links back.
Statuses: proposed | accepted | superseded-by-NNNN.
| ADR | Title |
|---|---|
| [0001](0001-go-single-binary.md) | Go with single-binary role packaging |
| [0002](0002-postgres-timescale-only-datastore.md) | PostgreSQL + TimescaleDB as the only datastore |
| [0003](0003-db-native-ontology-yaml-seeds.md) | DB-native ontology with YAML seed manifests |
| [0004](0004-openapi-first.md) | Contract-first OpenAPI API |
| [0005](0005-uuidv7-plus-slug-identity.md) | UUIDv7 + slug entity identity |
| [0006](0006-learning-proposal-only.md) | Learning is proposal-only (no self-authorization) |
| [0007](0007-threat-model.md) | Threat model and trust zones |
| [0008](0008-forward-only-migrations.md) | Forward-only migrations |
| [0009](0009-sse-over-websocket.md) | SSE over WebSocket for the event stream |
| [0010](0010-infisical-with-sops-fallback.md) | Infisical secrets with SOPS DR fallback |
| [0011](0011-client-lifecycle-flows.md) | Client lifecycle sequence diagrams |
| [0012](0012-hermes-oikos-interactions.md) | Hermes/Oikos interaction architecture |
| [0013](0013-signal-triggers.md) | Signal trigger architecture |
| [0014](0014-entity-model.md) | Entity model — types, relationships, state machines, OODA loop |
| [0015](0015-api-bearer-auth-client-server-split.md) | Bearer-token auth for every route + client/server split |