fix(scheduler): honour check_defs.interval_s, and renumber migrations off main

ListEnabledCheckDefs selected interval_s but never filtered on it, so every
enabled check ran on every 30s pass and the declared per-check intervals were
decorative. Invisible at 17 enabled checks; at ~180 it would have meant ~126
SSH connections every 30s (~363k/day) and `apt update` on every machine every
30 seconds — 14,400 mirror hits a day to answer a question that changes daily.

- check_defs.last_run_at (migration 026) + a due-ness predicate in the query.
  A column rather than scheduler memory because this control plane restarts on
  every deploy, and an in-memory map would re-fire every check on each restart.
- runCheck stamps last_run_at before processing the result, so a permanently
  failing check backs off to its interval instead of re-running every pass.
- updates and backup-freshness drop to daily. Both answer questions whose
  answers change about once a day; 60s was just the shared ssh-script default.
- last_run_at is seeded to a random offset within the interval so checks
  created by the same seed do not stay in lockstep — otherwise ~165 probes
  land in the same instant each minute instead of spread across it.
  Deliberately not in the upsert's DO UPDATE: a re-seed must not re-herd them.

Steady state becomes ~180k SSH/day (down from ~363k) and 5 apt runs/day
(down from 14,400), with each 60s check landing at its own point in the minute.

Also renumbers 022→023, 023→024, 024→025: origin/main added its own
022_knowledge_revisions, and prod has already applied version 22. Left
colliding, prod would have skipped the monitoring_spec migration entirely and
then failed the seed on a missing column.

Co-Authored-By: Claude <noreply@anthropic.com>

internal/db/queries/operations.sql

@@ -55,12 +55,20 @@ FROM events WHERE id > $1 ORDER BY id ASC LIMIT $2;
 -- =====================================================================
 
 -- name: ListEnabledCheckDefs :many
+-- Enabled AND due. interval_s used to be selected but never filtered on, so
+-- every check ran on every 30s pass and the declared intervals meant nothing.
+-- NULL last_run_at = never run = due now.
 SELECT cd.entity_id, cd.target_id, cd.target_type, cd.kind, cd.config,
        cd.interval_s, cd.timeout_s, cd.zone, cd.enabled, cd.updated_at,
        e.slug AS entity_slug
 FROM check_defs cd
 JOIN entities e ON e.id = cd.entity_id
-WHERE cd.enabled = true;
+WHERE cd.enabled = true
+  AND (cd.last_run_at IS NULL
+       OR cd.last_run_at <= now() - make_interval(secs => cd.interval_s));
+
+-- name: MarkCheckRun :exec
+UPDATE check_defs SET last_run_at = now() WHERE entity_id = $1;
 
 -- name: GetCheckDef :one
 SELECT * FROM check_defs WHERE entity_id = $1;

internal/db/seed.go

@@ -13,15 +13,15 @@ import (
 
 // SeedResult holds counts from a seed ingest operation.
 type SeedResult struct {
-	Lifecycles       int
-	EntityTypes      int
+	Lifecycles        int
+	EntityTypes       int
 	RelationshipTypes int
-	Entities         int
-	Relationships    int
-	RiskClasses      int
-	ApprovalRules    int
-	AutonomySettings int
-	Checks           int
+	Entities          int
+	Relationships     int
+	RiskClasses       int
+	ApprovalRules     int
+	AutonomySettings  int
+	Checks            int
 }
 
 // IngestOntologySeed ingests seeds/ontology.yaml into the DB.
@@ -476,4 +476,3 @@ func keysOf(m map[string]map[string]any) []string {
 	}
 	return keys
 }
-

internal/db/sqlcgen/models.go

@@ -46,6 +46,8 @@ type AgentSession struct {
 	Summary          string
 	EntityID         *uuid.UUID
 	CompletionNudges int32
+	Blocker          string
+	ClosedAt         *time.Time
 }
 
 type Approval struct {
@@ -110,6 +112,8 @@ type CheckDef struct {
 	Zone       *string
 	Enabled    bool
 	UpdatedAt  time.Time
+	// When this check last executed. NULL = never, due immediately. Compared against interval_s to decide due-ness.
+	LastRunAt *time.Time
 }
 
 type Classification struct {
@@ -177,6 +181,8 @@ type EntityType struct {
 	Status          string
 	CreatedAt       time.Time
 	UpdatedAt       time.Time
+	// Check kinds this type warrants, resolved through parent_type. NULL means undeclared (an ontology gap), [] means explicitly unmonitorable, ["http","resource"] means declared kinds. Populated from seeds/ontology.yaml.
+	MonitoringSpec []byte
 }
 
 type Event struct {
@@ -211,6 +217,14 @@ type Execution struct {
 	CreatedAt        time.Time
 }
 
+type ExecutionLog struct {
+	ExecutionID uuid.UUID
+	Ts          time.Time
+	Seq         int32
+	Stream      string
+	Chunk       string
+}
+
 type Feedback struct {
 	EntityID              uuid.UUID
 	ExecutionID           uuid.UUID

internal/db/sqlcgen/ontology.sql.go

@@ -30,7 +30,7 @@ func (q *Queries) GetLifecycleForType(ctx context.Context, name string) (Lifecyc
 }
 
 const listEntityTypes = `-- name: ListEntityTypes :many
-SELECT name, parent_type, is_abstract, domain, layer, description, lifecycle_id, attribute_schema, schema_version, status, created_at, updated_at FROM entity_types ORDER BY name
+SELECT name, parent_type, is_abstract, domain, layer, description, lifecycle_id, attribute_schema, schema_version, status, created_at, updated_at, monitoring_spec FROM entity_types ORDER BY name
 `
 
 func (q *Queries) ListEntityTypes(ctx context.Context) ([]EntityType, error) {
@@ -55,6 +55,7 @@ func (q *Queries) ListEntityTypes(ctx context.Context) ([]EntityType, error) {
 			&i.Status,
 			&i.CreatedAt,
 			&i.UpdatedAt,
+			&i.MonitoringSpec,
 		); err != nil {
 			return nil, err
 		}

internal/db/sqlcgen/operations.sql.go

@@ -51,7 +51,7 @@ func (q *Queries) GetAutonomySetting(ctx context.Context, key string) (string, e
 }
 
 const getCheckDef = `-- name: GetCheckDef :one
-SELECT entity_id, target_id, target_type, kind, config, interval_s, timeout_s, zone, enabled, updated_at FROM check_defs WHERE entity_id = $1
+SELECT entity_id, target_id, target_type, kind, config, interval_s, timeout_s, zone, enabled, updated_at, last_run_at FROM check_defs WHERE entity_id = $1
 `
 
 func (q *Queries) GetCheckDef(ctx context.Context, entityID uuid.UUID) (CheckDef, error) {
@@ -68,6 +68,7 @@ func (q *Queries) GetCheckDef(ctx context.Context, entityID uuid.UUID) (CheckDef
 		&i.Zone,
 		&i.Enabled,
 		&i.UpdatedAt,
+		&i.LastRunAt,
 	)
 	return i, err
 }
@@ -695,6 +696,8 @@ SELECT cd.entity_id, cd.target_id, cd.target_type, cd.kind, cd.config,
 FROM check_defs cd
 JOIN entities e ON e.id = cd.entity_id
 WHERE cd.enabled = true
+  AND (cd.last_run_at IS NULL
+       OR cd.last_run_at <= now() - make_interval(secs => cd.interval_s))
 `
 
 type ListEnabledCheckDefsRow struct {
@@ -714,6 +717,9 @@ type ListEnabledCheckDefsRow struct {
 // =====================================================================
 // Phase 3 queries
 // =====================================================================
+// Enabled AND due. interval_s used to be selected but never filtered on, so
+// every check ran on every 30s pass and the declared intervals meant nothing.
+// NULL last_run_at = never run = due now.
 func (q *Queries) ListEnabledCheckDefs(ctx context.Context) ([]ListEnabledCheckDefsRow, error) {
 	rows, err := q.db.Query(ctx, listEnabledCheckDefs)
 	if err != nil {
@@ -1126,6 +1132,15 @@ func (q *Queries) ListSkills(ctx context.Context, status *string) ([]Skill, erro
 	return items, nil
 }
 
+const markCheckRun = `-- name: MarkCheckRun :exec
+UPDATE check_defs SET last_run_at = now() WHERE entity_id = $1
+`
+
+func (q *Queries) MarkCheckRun(ctx context.Context, entityID uuid.UUID) error {
+	_, err := q.db.Exec(ctx, markCheckRun, entityID)
+	return err
+}
+
 const putIdempotentResponse = `-- name: PutIdempotentResponse :exec
 INSERT INTO idempotency_keys (actor, key, request_hash, response_code, response_body)
 VALUES ($1, $2, $3, $4, $5)