Problem: after the wiki-hq reorg, agent-instruction and human-doc domains were still scattered across the repo root, with three now-redundant stub files cluttering it. The organizing principle wasn't visible in the layout. Change — enforce three clear buckets: - .agents/ = how agents operate: OIKOS.md, HERMES.md (moved from root), shared/ conventions, domains/ schemas, skills/, and operations/ (operator cheatsheet + enrollment + hermes-agent, moved from root). - knowledge/ = what exists + evidence: wiki/, GLOSSARY.md, and sources/ now including investigations/ (incident records are evidence/sources). - root = substrate + two entry points (AGENTS.md, README.md), plus plans/ as its own design-intent domain. Moves: - investigations/ -> knowledge/sources/investigations/ (incl. archive/, index). - operations/ -> .agents/operations/. - HERMES.md -> .agents/HERMES.md. - Deleted unreferenced root stubs CAVEMAN.md, CONTRIBUTING.md, and OIKOS.md (its 7 remaining linkers repointed to .agents/OIKOS.md). Consumers updated: - inventory.yaml doc_page (agent-enrollment) + regenerated hosts/*.yaml + cards. - tools/setup-hermes-soul.sh and bootstrap.sh (x2) -> .agents/HERMES.md. - bin/homelab help string -> .agents/operations/hermes-agent.md. - knowledge/operations schemas, llm-wiki, page-templates, incident-investigation skill, AGENTS.md/README nav -> new investigations/operations paths. - All markdown links rewritten via the path-resolving mapper. Left in place (substrate/executable/separate-domain): hosts/, ledger/, tools/, plans/, oikos/, mcp/, secrets/, bin/, inventory.yaml. Verification: docs-lint at baseline (2 intentional cross-repo refs, no new breakage); gen-topology.py --check exit 0; build_host_files.py idempotent; all doc_page targets resolve; Hermes provisioning scripts point at the new path. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
4.2 KiB
name, risk_class, verification
| name | risk_class | verification |
|---|---|---|
| recover-dpkg-interrupted | reversible_low | dpkg --audit (should be clean); apt-get check |
Runbook — recover from dpkg-interrupted state
You're here because an apt run got killed mid-transaction and the target now has packages that are unpacked but not configured. Symptoms:
aptrefuses to do anything new:Error: dpkg was interrupted, you must manually run 'dpkg --configure -a' to correct the problem.dpkg --auditlists packages with headerThe following packages have been unpacked but not yet configured.homelab apt-auditshowsDPKG: DIRTY(N)for the host.
The system is still running the old binaries (still in memory), but the new binaries are unpacked and waiting for their postinst to run. Two worst-case manifestations from the 2026-05-21 sweep:
- LXC 121 caddy: leftover state from a prior aborted apt run; caddy itself was still serving but the new caddy binary on disk hadn't been wired up.
- hubris: ssh master died mid-Wave-6 → 135 packages unpacked-not-configured,
including
systemd,openssh-server,sudo,netbird. The half- configured netbird daemon dropped the mesh peer, and we got locked out until we recovered from the PVE web UI Shell.
Do not reboot until dpkg is clean. A reboot tries to start the new binaries' services, which may fail because postinst never ran (missing users, config dirs, capabilities, etc.). The system might not come back up cleanly.
Path A — target is still reachable over ssh (preferred)
homelab ssh <host> -- bash -c 'DEBIAN_FRONTEND=noninteractive dpkg --configure -a && apt -y -o Dpkg::Options::=--force-confold upgrade'
Or for an LXC by name:
homelab pct <lxc> exec -- bash -c 'DEBIAN_FRONTEND=noninteractive dpkg --configure -a && apt -y -o Dpkg::Options::=--force-confold upgrade'
When that returns, confirm:
homelab apt-audit --target <host>
Expect DPKG: ok and the remaining UPGR count to match what's intentionally
deferred (kernel/PVE on hubris, 0 elsewhere).
Path B — target locked out (mesh broken / ssh dead)
Most common for hubris when netbird itself went half-configured: the daemon crashed on the new binary, the mesh peer dropped, port 22022 stopped listening, and you can't ssh in.
- Open
https://proxmox.hubris.networkin a browser. - Datacenter → node
hubris→>_ Shell(or_ Console). That's a root shell on hubris served by the PVE web UI, independent of the netbird mesh. - Run the recovery one-liner:
DEBIAN_FRONTEND=noninteractive dpkg --configure -a \
&& DEBIAN_FRONTEND=noninteractive apt -y -o Dpkg::Options::=--force-confold upgrade \
&& systemctl restart netbird \
&& dpkg --audit \
&& echo RECOVERY_OK
Wait for RECOVERY_OK. The systemctl restart netbird is the bit that
heals the mesh — once netbird's daemon comes back up clean, your client's
peer state moves from Connecting to Connected within ~30 seconds and
the rest of your tooling works again.
-
For an LXC that's locked out (less common — LXCs reach the world via netbird routed through hubris, so unless hubris itself is broken, you can still
pct enterfrom the hubris shell):From the PVE web UI shell on hubris:
pct enter <id> DEBIAN_FRONTEND=noninteractive dpkg --configure -a && apt -y upgrade exit
Prevention
The homelab apt-upgrade wrapper launches apt inside a systemd-run --collect
unit on the target, so it survives ssh teardown — the failure mode that put
hubris into this state in the first place is no longer reachable through the
standard tool. If you absolutely need to run apt manually over ssh, wrap it:
ssh <host> systemd-run --unit=apt-recovery --collect bash -c 'apt -y upgrade'
Then systemctl status apt-recovery from a fresh ssh to check progress.
Related
Changelog
2026-05-21 — initial page
Documents the dpkg-interrupted recovery path that came out of the fleet apt sweep (Wave 6 killed mid-transaction; hubris recovered via PVE web Shell).