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docs: fix plan/repo drift, retire dead Goose+Nomos and Caveman tooling
Documentation and repo-hygiene pass following the client/server split:

Plan drift (audited all other active plans against current code):
- oikos-gaps-and-improvements.md: mark Section C and D.5 resolved (both
  described cmd/hermes, renamed to cmd/nomos with a real LLM loop since);
  refresh ~10 stale file:line citations; fix tool-count (33, not 28).
- liveness-drift-and-ux-cohesion.md: fix stale default-model claim (now
  deepseek-v4-pro since 2026-07-10) and "not yet deployed" status.
- nomos-agent-code-review.md: fix C1's citation (one unauthenticated route
  to nomos now, not two, after the client/server split).
- wails-desktop-app.md: record the production deploy outcome.

Repo structure: added missing directories to README/CONTRIBUTING layout
tables (checks/, tools/, cmd/webhook/, docs/operations/), fixed a broken
link, added ADR 0015 documenting the auth/CORS/client-split model (there
wasn't one despite CONTRIBUTING's own process requiring it), normalized
ADR 0013/0014's format drift, added an Authentication section to
AGENTS.md/CLIENTS.md (every example call was missing the now-required
bearer header).

Retired the Goose+Nomos workstation flow (bootstrap.sh --with-nomos,
tools/setup-nomos-soul.sh, .agents/operations/nomos-agent.md) and the
Caveman auto-install tooling (tools/setup-caveman.sh, tools/caveman/) —
both superseded by the production containerized Nomos agent, which has
never used either. Kept .agents/shared/caveman.md itself (the terse
writing-style convention agents still follow by reading it).

Deleted the orphaned legacy Python oikos/ directory — nothing imports it,
and bin/homelab (the CLI it was kept for) no longer exists in the repo.

Rewrote .agents/operations/agent-enrollment.md (365 -> ~110 lines) and
commands.md to match the current architecture instead of the retired
`homelab` CLI; migrated the still-true networking prerequisites (Netbird,
split-horizon DNS, SSH key distribution) into the knowledge base as a
runbook via upsert_knowledge rather than duplicating them in markdown.
Updated all 10 .agents/skills/ runbooks referencing the dead CLI with
their real MCP tool / REST API equivalents, or flagged them as needing
verification where no equivalent is confirmed yet.

Two real bugs found and fixed, not just docs:
- The tools/setup-*.sh auto-setup glob was tools/*.setup.sh in THREE
  places (tools/post-pull.sh, bootstrap.sh, and internal/httpapi/impl.go's
  GetClientContext handler) since the mechanism's introduction on
  2026-06-02 — never matched any real filename, so no client has ever
  picked up an auto-setup script via git-pull or the context-poller sync.
  Fixed all three; the Go server-side fix is the one that actually matters
  since it's what the current context-poller mechanism depends on.
- bootstrap.sh removed dead vestigial --gitea-token/--gitea-user flags
  (parsed, never consumed) left over from an earlier clone-based model.

Also flagged, not fixed (documented as an open gap in
client-enrollment/SKILL.md): bootstrap.sh tells a freshly-enrolled client
to call POST /api/v1/clients/{slug}/activate to finish enrollment, but
that route doesn't exist in api/openapi.yaml — EnrollClient sets entities
to provisioning and nothing currently transitions them to active.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
2026-07-12 18:19:41 +02:00

4.4 KiB

name, risk_class, verification
name risk_class verification
recover-dpkg-interrupted reversible_low dpkg --audit (should be clean); apt-get check

Runbook — recover from dpkg-interrupted state

You're here because an apt run got killed mid-transaction and the target now has packages that are unpacked but not configured. Symptoms:

  • apt refuses to do anything new: Error: dpkg was interrupted, you must manually run 'dpkg --configure -a' to correct the problem.
  • dpkg --audit lists packages with header The following packages have been unpacked but not yet configured.
  • dpkg --audit on the host directly shows unpacked-not-configured packages (there's no fleet-wide audit tool anymore — check per-host).

The system is still running the old binaries (still in memory), but the new binaries are unpacked and waiting for their postinst to run. Two worst-case manifestations from the 2026-05-21 sweep:

  • LXC 121 caddy: leftover state from a prior aborted apt run; caddy itself was still serving but the new caddy binary on disk hadn't been wired up.
  • hubris: ssh master died mid-Wave-6 → 135 packages unpacked-not-configured, including systemd, openssh-server, sudo, netbird. The half- configured netbird daemon dropped the mesh peer, and we got locked out until we recovered from the PVE web UI Shell.

Do not reboot until dpkg is clean. A reboot tries to start the new binaries' services, which may fail because postinst never ran (missing users, config dirs, capabilities, etc.). The system might not come back up cleanly.

Path A — target is still reachable over ssh (preferred)

ssh <host> -- bash -c 'DEBIAN_FRONTEND=noninteractive dpkg --configure -a && apt -y -o Dpkg::Options::=--force-confold upgrade'

Or for an LXC by name (via the MCP run tool, or directly on the Proxmox host):

pct exec <lxc> -- bash -c 'DEBIAN_FRONTEND=noninteractive dpkg --configure -a && apt -y -o Dpkg::Options::=--force-confold upgrade'

When that returns, confirm:

ssh <host> -- dpkg --audit

Expect DPKG: ok and the remaining UPGR count to match what's intentionally deferred (kernel/PVE on hubris, 0 elsewhere).

Path B — target locked out (mesh broken / ssh dead)

Most common for hubris when netbird itself went half-configured: the daemon crashed on the new binary, the mesh peer dropped, port 22022 stopped listening, and you can't ssh in.

  1. Open https://proxmox.hubris.network in a browser.
  2. Datacenter → node hubris>_ Shell (or _ Console). That's a root shell on hubris served by the PVE web UI, independent of the netbird mesh.
  3. Run the recovery one-liner:
DEBIAN_FRONTEND=noninteractive dpkg --configure -a \
  && DEBIAN_FRONTEND=noninteractive apt -y -o Dpkg::Options::=--force-confold upgrade \
  && systemctl restart netbird \
  && dpkg --audit \
  && echo RECOVERY_OK

Wait for RECOVERY_OK. The systemctl restart netbird is the bit that heals the mesh — once netbird's daemon comes back up clean, your client's peer state moves from Connecting to Connected within ~30 seconds and the rest of your tooling works again.

  1. For an LXC that's locked out (less common — LXCs reach the world via netbird routed through hubris, so unless hubris itself is broken, you can still pct enter from the hubris shell):

    From the PVE web UI shell on hubris:

    pct enter <id>
    DEBIAN_FRONTEND=noninteractive dpkg --configure -a && apt -y upgrade
    exit
    

Prevention

The old homelab apt-upgrade wrapper (retired along with the rest of the homelab CLI) used to launch apt inside a systemd-run --collect unit on the target so it survived ssh teardown — that's the failure mode that put hubris into this state in the first place. There's no fleet-wide wrapper anymore; if you run apt manually over ssh, wrap it yourself the same way:

ssh <host> systemd-run --unit=apt-recovery --collect bash -c 'apt -y upgrade'

Then systemctl status apt-recovery from a fresh ssh to check progress.

Changelog

2026-05-21 — initial page

Documents the dpkg-interrupted recovery path that came out of the fleet apt sweep (Wave 6 killed mid-transaction; hubris recovered via PVE web Shell).