chore: graph view, dns-zone gap, fleet deploy/cleanup tooling

Graph view: raise the node cap 500 -> 2000 and exclude execution/task audit
rows from the default whole-graph view so the cap is spent on actual topology
rather than ~380 cognition records that crowded out every host/lxc/service.

dns-zone monitoring [dns] -> none: no dns checker exists, so the declaration
only produced unresolvable `unmonitored` noise (requires ontology re-ingest;
coverageSweep now auto-clears the stale signals). Flip back to [dns] when a
checker lands.

Operator tooling: tools/deploy-checks.sh pushes check scripts into guests via
pct push (a pct-exec-routed check runs the script INSIDE the guest), wired
into the post-pull setup-checks hook so guests stay in sync on Proxmox hosts;
scripts/cleanup-orphan-checks.sh (dry-run by default) and
report-stray-test-lxcs.sh retire legacy cruft. VERSION 0.13.0 -> 0.14.0.

Plan: plans/2026-07-29-health-check-reality-and-knowledge-graph.md.

.agents/skills/knowledge-graph-audit/SKILL.md

@@ -0,0 +1,83 @@
+---
+name: knowledge-graph-audit
+risk_class: read_only
+inputs: []
+verification: "audit_knowledge_graph returns a report with summary.total_findings"
+docs_update_checklist: []
+---
+
+# Knowledge-graph audit
+
+Goal: validate that the knowledge graph (entities, relationships, checks) and
+the monitoring built on it reflect live reality — without mutating anything.
+Read-only. Run this before trusting health, blast-radius, or coverage answers,
+and whenever something feels off (a healthy host reports `down`, a retired
+service still alarms, the graph looks thin).
+
+## 1. Run the drift report
+
+Call MCP `audit_knowledge_graph` (or `GET /api/v1/audit/drift`). It returns a
+ranked list of findings, each with `{category, severity, count, entities,
+evidence, suggested_runbook}`, plus a `summary` with totals by category.
+
+The DB-side categories:
+
+- **orphan_checks** — check entities with truncated/random slugs left by the
+  old `shortSlug()` collision bug. Remediation: `scripts/cleanup-orphan-checks.sh`.
+- **dead_checks** — enabled `check_defs` whose target entity is `deprecated`/
+  `destroyed`. Remediation: `lifecycle-deprecate-node` / `lifecycle-destroy-node`
+  (the scheduler already skips these, but the rows should be retired).
+- **down_checks** — enabled probes reporting `down`. Remediation:
+  `service-health-check` (then check whether the failure is real or a
+  probe-config/routing problem — see step 3).
+- **unknown_checks** — probes that ran but reported `unknown` (usually a
+  misconfigured or not-yet-deployed probe script).
+- **unmonitored** — active entities whose type declares monitoring but have no
+  enabled `check_def`.
+- **dangling_edges** — live `hosts`/`provides`/`mounts` edges still pointing at
+  destroyed/deprecated targets. Remediation: `lifecycle-destroy-node`.
+
+## 2. Triage
+
+`severity: critical` (down_checks) first. For each finding, read `evidence` and
+open the entities with `get_entity` / `get_relations` to confirm the diagnosis
+before acting — the report is a pointer, not a verdict.
+
+## 3. Common probe-failure causes
+
+A `down_checks` finding that is NOT a real outage is usually one of:
+
+- **Guest reached wrong** — an LXC/VM check SSHed the guest directly instead of
+  routing through its Proxmox host. Confirm with `get_relations` that a `hosts`
+  edge exists and the guest has `pve_id`; checks route via `pct exec`/`qm guest
+  exec` automatically when both are present.
+- **Script not deployed** — the probe script is absent at `/opt/oikos/checks/`
+  inside the target. Remediation: redeploy via `tools/deploy-checks.sh`.
+- **macOS host** — a workstation check used the wrong SSH user or a Linux-only
+  script flag. The scheduler resolves `user: dtoro` from the entity attribute.
+
+## 4. What this audit does NOT cover (follow-ups)
+
+Live-infrastructure discovery is out of scope for the DB report and must be done
+manually until that machinery lands:
+
+- **Ghost vs missing entities** — cross-check `pct list` / `qm list` (on
+  `host:hubris`, `host:strong`) and `docker ps` against `list_entities`. A guest
+  with no entity, or an entity with no guest, is drift.
+- **Misplaced parent** — compare each guest's actual Proxmox host against its
+  `hosts` edge (migrations leave these stale).
+- **Undeployed scripts** — per-guest `/opt/oikos/checks/` presence.
+- **Unmodeled certs** — Caddy-managed TLS certs with no `certificate` entity.
+- **Seed drift** — run `oikos export` and `git diff seeds/` to find
+  runtime-created entities not in version control.
+
+## 5. Acting on findings
+
+This skill is read-only — make no changes here. Route each confirmed finding to
+its `suggested_runbook`, classify the action against `seeds/policy.yaml`, and
+proceed through the normal lifecycle/approval flow. Re-run the audit afterward
+to confirm the finding cleared.
+
+Docs-update checklist: none — the audit reads state; it changes nothing. If a
+finding reveals stale `risk_notes` or a wrong `doc_page`, fix `inventory.yaml`
+in that remediation session.

VERSION

@@ -1 +1 @@
-0.13.0
+0.14.0

checks/cpu_check.sh

@@ -2,12 +2,27 @@
 # cpu_check.sh — CPU usage % and thermal temperature.
 set -euo pipefail
 
-USAGE=$(top -bn1 2>/dev/null | awk '/^%Cpu/ {print 100 - $8}' || true)
-if [ -z "$USAGE" ]; then
-  CORES=$(nproc 2>/dev/null || sysctl -n hw.ncpu 2>/dev/null || echo 1)
-  USAGE=$(awk -v cores="$CORES" '{print ($1+$2+$3)*100/cores}' /proc/loadavg 2>/dev/null || echo "0")
+os=$(uname -s)
+
+if [ "$os" = "Darwin" ]; then
+  # `top -l 1 -n 0` prints "CPU usage: X% user, Y% sys, Z% idle".
+  # Usage is 100 minus the idle figure that precedes the literal `idle`.
+  USAGE=$(top -l 1 -n 0 -s 0 2>/dev/null | awk '
+    /^CPU usage/ {
+      for (i = 1; i <= NF; i++) {
+        if ($i == "idle") { gsub(/%/, "", $(i - 1)); printf "%.1f", 100 - $(i - 1) }
+      }
+    }' || true)
+else
+  USAGE=$(top -bn1 2>/dev/null | awk '/^%Cpu/ {print 100 - $8}' || true)
+  if [ -z "$USAGE" ]; then
+    CORES=$(nproc 2>/dev/null || sysctl -n hw.ncpu 2>/dev/null || echo 1)
+    USAGE=$(awk -v cores="$CORES" '{print ($1+$2+$3)*100/cores}' /proc/loadavg 2>/dev/null || echo "0")
+  fi
 fi
 
+[ -z "$USAGE" ] && USAGE=0
+
 TEMP=""
 if [ -f /sys/class/thermal/thermal_zone0/temp ]; then
   TEMP=$(awk '{printf "%.1f", $1/1000}' /sys/class/thermal/thermal_zone0/temp 2>/dev/null || true)

internal/audit/audit.go

@@ -0,0 +1,125 @@
+// Package audit produces read-only drift reports over the knowledge graph and
+// monitoring state. It is the shared engine behind the
+// /api/v1/audit/drift endpoint and the audit_knowledge_graph MCP tool.
+//
+// It surfaces the structural gaps an operator otherwise discovers only by
+// accident: orphan check entities, checks targeting retired entities, probes
+// stuck down/unknown, unmonitored declared types, and live edges pointing at
+// destroyed/deprecated targets. Live-infra discovery (pct/docker/certs) is a
+// follow-up that needs host-hop execution; these categories are pure DB
+// queries, so the report is cheap, safe to run unattended, and testable.
+package audit
+
+import (
+	"context"
+
+	"github.com/dtoro/oikos/internal/db"
+)
+
+// Finding is one drift item the operator should look at.
+type Finding struct {
+	Category         string   `json:"category"`
+	Severity         string   `json:"severity"` // info | warning | critical
+	Count            int      `json:"count"`
+	Entities         []string `json:"entities"`
+	Evidence         string   `json:"evidence"`
+	SuggestedRunbook string   `json:"suggested_runbook"`
+}
+
+// Summary tallies findings by category.
+type Summary struct {
+	TotalFindings int            `json:"total_findings"`
+	ByCategory    map[string]int `json:"by_category"`
+}
+
+// Report runs every drift check and returns the findings plus a summary.
+func Report(ctx context.Context, pool *db.Pool) ([]Finding, Summary) {
+	specs := []struct {
+		finding Finding
+		query   string
+	}{
+		{
+			Finding{Category: "orphan_checks", Severity: "warning",
+				Evidence:         "check entities with truncated/random slugs (legacy shortSlug bug), no live target",
+				SuggestedRunbook: "scripts/cleanup-orphan-checks.sh"},
+			`SELECT e.slug FROM entities e
+			 WHERE e.type = 'check'
+			   AND e.slug ~ '^check:(ping|ssh-script|disk):[0-9a-f]{8}$'`,
+		},
+		{
+			Finding{Category: "dead_checks", Severity: "warning",
+				Evidence:         "enabled check_defs whose target entity is deprecated/destroyed",
+				SuggestedRunbook: "lifecycle-deprecate-node / lifecycle-destroy-node"},
+			`SELECT e.slug FROM check_defs cd
+			 JOIN entities e ON e.id = cd.entity_id
+			 JOIN entities tgt ON tgt.id = cd.target_id
+			 WHERE cd.enabled AND tgt.state IN ('deprecated','destroyed')`,
+		},
+		{
+			Finding{Category: "down_checks", Severity: "critical",
+				Evidence:         "enabled checks reporting health=down",
+				SuggestedRunbook: "service-health-check"},
+			`SELECT e.slug FROM check_defs cd JOIN entities e ON e.id = cd.entity_id
+			 WHERE cd.enabled AND cd.last_health = 'down'`,
+		},
+		{
+			Finding{Category: "unknown_checks", Severity: "warning",
+				Evidence:         "enabled checks that ran but reported health=unknown (likely misconfigured probe)",
+				SuggestedRunbook: "knowledge-graph-audit"},
+			`SELECT e.slug FROM check_defs cd JOIN entities e ON e.id = cd.entity_id
+			 WHERE cd.enabled AND cd.last_health = 'unknown'`,
+		},
+		{
+			Finding{Category: "unmonitored", Severity: "warning",
+				Evidence:         "active entities whose type declares monitoring but have no enabled check_def",
+				SuggestedRunbook: "knowledge-graph-audit"},
+			`SELECT DISTINCT e.slug FROM signals sg
+			 JOIN entities e ON e.id = sg.target_entity_id
+			 WHERE sg.kind = 'unmonitored' AND sg.state IN ('raised','acknowledged','acting')`,
+		},
+		{
+			Finding{Category: "dangling_edges", Severity: "warning",
+				Evidence:         "live relationships (hosts/provides/mounts) pointing at destroyed/deprecated targets",
+				SuggestedRunbook: "lifecycle-destroy-node"},
+			`SELECT src.slug || ' -' || r.type || '-> ' || tgt.slug FROM relationships r
+			 JOIN entities src ON src.id = r.source_id
+			 JOIN entities tgt ON tgt.id = r.target_id
+			 WHERE r.valid_to IS NULL
+			   AND src.state NOT IN ('destroyed','deprecated')
+			   AND tgt.state IN ('destroyed','deprecated')`,
+		},
+	}
+
+	findings := make([]Finding, 0, len(specs))
+	summary := Summary{ByCategory: map[string]int{}}
+	for _, sp := range specs {
+		f := runFinding(ctx, pool, sp.finding, sp.query)
+		findings = append(findings, f)
+		summary.TotalFindings += f.Count
+		summary.ByCategory[f.Category] = f.Count
+	}
+	return findings, summary
+}
+
+const entityCap = 50
+
+// runFinding runs a single-column slug query and folds the rows into a Finding.
+func runFinding(ctx context.Context, pool *db.Pool, f Finding, query string) Finding {
+	rows, err := pool.Query(ctx, query)
+	if err != nil {
+		f.Evidence = f.Evidence + " (query error: " + err.Error() + ")"
+		return f
+	}
+	defer rows.Close()
+	for rows.Next() {
+		var slug string
+		if err := rows.Scan(&slug); err != nil {
+			continue
+		}
+		f.Count++
+		if len(f.Entities) < entityCap {
+			f.Entities = append(f.Entities, slug)
+		}
+	}
+	return f
+}

internal/audit/audit_test.go

@@ -0,0 +1,69 @@
+package audit
+
+import (
+	"context"
+	"testing"
+
+	"github.com/dtoro/oikos/internal/db"
+	"github.com/google/uuid"
+)
+
+// Integration tests against a real Postgres, guarded by
+// OIKOS_TEST_DATABASE_URL (same convention as internal/scheduler).
+
+func newAuditPool(t *testing.T) *db.Pool {
+	t.Helper()
+	base := getenvOrDefault("OIKOS_TEST_DATABASE_URL", "")
+	if base == "" {
+		t.Skip("OIKOS_TEST_DATABASE_URL not set — skipping integration test")
+	}
+	return createTestDB(t, base)
+}
+
+func TestReportFlagsOrphanAndDeadAndDown(t *testing.T) {
+	pool := newAuditPool(t)
+	ctx := context.Background()
+
+	// An orphan check entity (truncated random slug, the legacy bug shape).
+	mustExec(t, pool, ctx, `INSERT INTO entities (id, slug, type, name, state, attributes, version, created_at, updated_at)
+		VALUES ($1,'check:ssh-script:0d31fdd1','check','check:ssh-script:0d31fdd1','active','{}'::jsonb,1,now(),now())`, uuid.New())
+
+	// An active entity + a check_def on it stuck down.
+	target := uuid.New()
+	mustExec(t, pool, ctx, `INSERT INTO entities (id, slug, type, name, state, attributes, version, created_at, updated_at)
+		VALUES ($1,'service:demo','service','demo','active','{}'::jsonb,1,now(),now())`, target)
+	checkE := uuid.New()
+	mustExec(t, pool, ctx, `INSERT INTO entities (id, slug, type, name, state, attributes, version, created_at, updated_at)
+		VALUES ($1,'check:http:service:demo:0','check','c','active','{}'::jsonb,1,now(),now())`, checkE)
+	mustExec(t, pool, ctx, `INSERT INTO check_defs (entity_id, target_id, target_type, kind, config, interval_s, timeout_s, enabled, last_run_at, last_health)
+		VALUES ($1,$2,'service','http','{}'::jsonb,60,30,true,now(),'down')`, checkE, target)
+
+	// A deprecated entity still carrying an enabled check (dead_checks).
+	dep := uuid.New()
+	mustExec(t, pool, ctx, `INSERT INTO entities (id, slug, type, name, state, attributes, version, created_at, updated_at)
+		VALUES ($1,'service:old','service','old','deprecated','{}'::jsonb,1,now(),now())`, dep)
+	depCheck := uuid.New()
+	mustExec(t, pool, ctx, `INSERT INTO entities (id, slug, type, name, state, attributes, version, created_at, updated_at)
+		VALUES ($1,'check:http:service:old:0','check','c','active','{}'::jsonb,1,now(),now())`, depCheck)
+	mustExec(t, pool, ctx, `INSERT INTO check_defs (entity_id, target_id, target_type, kind, config, interval_s, timeout_s, enabled, last_run_at)
+		VALUES ($1,$2,'service','http','{}'::jsonb,60,30,true,now())`, depCheck, dep)
+
+	findings, summary := Report(ctx, pool)
+
+	byCat := map[string]int{}
+	for _, f := range findings {
+		byCat[f.Category] = f.Count
+	}
+	if byCat["orphan_checks"] < 1 {
+		t.Errorf("orphan_checks = %d, want >=1", byCat["orphan_checks"])
+	}
+	if byCat["down_checks"] < 1 {
+		t.Errorf("down_checks = %d, want >=1", byCat["down_checks"])
+	}
+	if byCat["dead_checks"] < 1 {
+		t.Errorf("dead_checks = %d, want >=1", byCat["dead_checks"])
+	}
+	if summary.TotalFindings < 3 {
+		t.Errorf("TotalFindings = %d, want >=3", summary.TotalFindings)
+	}
+}

internal/audit/testutil_test.go

@@ -0,0 +1,67 @@
+package audit
+
+import (
+	"context"
+	"fmt"
+	"math/rand"
+	"os"
+	"strings"
+	"testing"
+
+	"github.com/dtoro/oikos/internal/db"
+	"github.com/jackc/pgx/v5"
+)
+
+// createTestDB provisions a throwaway migrated database, same convention as
+// internal/scheduler/coverage_test.go.
+func createTestDB(t *testing.T, baseURL string) *db.Pool {
+	t.Helper()
+	ctx := context.Background()
+
+	admin, err := pgx.Connect(ctx, baseURL)
+	if err != nil {
+		t.Fatalf("connect admin: %v", err)
+	}
+	dbName := fmt.Sprintf("oikos_aud_%08x", rand.Int63())
+	if _, err := admin.Exec(ctx, "CREATE DATABASE "+dbName); err != nil {
+		admin.Close(ctx)
+		t.Fatalf("create test db: %v", err)
+	}
+	admin.Close(ctx)
+
+	at := strings.LastIndex(baseURL, "/")
+	testURL := baseURL[:at+1] + dbName
+	if q := strings.Index(baseURL[at:], "?"); q >= 0 {
+		testURL += baseURL[at+q:]
+	}
+
+	pool, err := db.New(ctx, testURL)
+	if err != nil {
+		t.Fatalf("connect test db: %v", err)
+	}
+	if err := pool.Migrate(ctx); err != nil {
+		t.Fatalf("migrate: %v", err)
+	}
+	t.Cleanup(func() {
+		pool.Close()
+		if admin, err := pgx.Connect(ctx, baseURL); err == nil {
+			admin.Exec(ctx, "DROP DATABASE IF EXISTS "+dbName+" WITH (FORCE)")
+			admin.Close(ctx)
+		}
+	})
+	return pool
+}
+
+func getenvOrDefault(key, def string) string {
+	if v := os.Getenv(key); v != "" {
+		return v
+	}
+	return def
+}
+
+func mustExec(t *testing.T, pool *db.Pool, ctx context.Context, q string, args ...any) {
+	t.Helper()
+	if _, err := pool.Exec(ctx, q, args...); err != nil {
+		t.Fatalf("exec %s: %v", q, err)
+	}
+}

internal/checkdefaults/defaults.go

@@ -380,6 +380,12 @@ func resolveHost(attrs map[string]any) string {
 	if ip, ok := attrs["lan_ip"].(string); ok && ip != "" {
 		return ip
 	}
+	// public_ipv4 before mesh: the scheduler container has no mesh interface,
+	// so a standalone-server reachable only by mesh IP (netbird-vps) is
+	// unprobeable even though a public IPv4 is available.
+	if ip, ok := attrs["public_ipv4"].(string); ok && ip != "" {
+		return ip
+	}
 	if mesh, ok := attrs["mesh"].(map[string]any); ok {
 		if nb, ok := mesh["netbird"].(map[string]any); ok {
 			if ip, ok := nb["ip"].(string); ok && ip != "" {
@@ -409,6 +415,13 @@ func resolveSSHUser(attrs map[string]any) string {
 			return u
 		}
 	}
+	// Workstations carry their login as a top-level `user` attribute
+	// (mac-mini: user: dtoro) rather than under ssh.user. Take it only when
+	// no explicit ssh.user was set, so a host that genuinely wants root still
+	// gets root.
+	if u, ok := attrs["user"].(string); ok && u != "" {
+		return u
+	}
 	return "root"
 }
 

internal/db/queries/operations.sql

@@ -63,7 +63,9 @@ SELECT cd.entity_id, cd.target_id, cd.target_type, cd.kind, cd.config,
        e.slug AS entity_slug
 FROM check_defs cd
 JOIN entities e ON e.id = cd.entity_id
+LEFT JOIN entities tgt ON tgt.id = cd.target_id
 WHERE cd.enabled = true
+  AND (tgt.id IS NULL OR tgt.state NOT IN ('deprecated', 'destroyed'))
   AND (cd.last_run_at IS NULL
        OR cd.last_run_at <= now() - make_interval(secs => cd.interval_s));
 

internal/db/sqlcgen/operations.sql.go

@@ -696,7 +696,9 @@ SELECT cd.entity_id, cd.target_id, cd.target_type, cd.kind, cd.config,
        e.slug AS entity_slug
 FROM check_defs cd
 JOIN entities e ON e.id = cd.entity_id
+LEFT JOIN entities tgt ON tgt.id = cd.target_id
 WHERE cd.enabled = true
+  AND (tgt.id IS NULL OR tgt.state NOT IN ('deprecated', 'destroyed'))
   AND (cd.last_run_at IS NULL
        OR cd.last_run_at <= now() - make_interval(secs => cd.interval_s))
 `

internal/httpapi/audit.go

@@ -0,0 +1,20 @@
+package httpapi
+
+import (
+	"net/http"
+
+	"github.com/dtoro/oikos/internal/audit"
+)
+
+// serveAuditDrift returns a read-only DB-side drift report: orphan check
+// entities, checks on retired targets, probes stuck down/unknown, unmonitored
+// declared types, and dangling edges. Companion to the knowledge-graph-audit
+// skill. Live-infra discovery (pct/docker/certs) is a follow-up.
+func (s *Server) serveAuditDrift(w http.ResponseWriter, req *http.Request) {
+	findings, summary := audit.Report(req.Context(), s.pool)
+	writeJSON(w, map[string]any{
+		"findings": findings,
+		"summary":  summary,
+		"note":     "read-only DB drift report; live-infra discovery (pct/docker/certs) is a follow-up",
+	})
+}

internal/httpapi/impl.go

@@ -24,7 +24,12 @@ import (
 const (
 	defaultLimit = 50
 	maxLimit     = 200
-	graphNodeCap = 500
+	// graphNodeCap bounds the whole-graph view. The cognition transactional
+	// types (execution, task) are audit records, not topology, and previously
+	// crowded out every host/lxc/service; the default whole-graph view below
+	// excludes them so the cap is spent on the actual fleet graph. Operators
+	// still reach executions/tasks via list_entities.
+	graphNodeCap = 2000
 )
 
 // actorInfo returns the caller's (type, label) from the request context,
@@ -307,14 +312,19 @@ func (s *Server) GetGraph(ctx context.Context, req gen.GetGraphRequestObject) (g
 		// alphabetically.  Without this the cap fills with exec:* rows and
 		// drops every host/lxc/service/vm — and every edge those entities
 		// connect — because edges require both endpoints in the node set.
+		// Exclude the cognition transactional types (execution/task): they
+		// are audit records rather than topology, and at ~380 rows they
+		// consumed most of the old 500-node cap.
 		nodes, err = s.queryEntities(ctx, `
 			SELECT `+entityCols+`
 			FROM entities e
 			LEFT JOIN entity_status st ON st.entity_id = e.id
-			WHERE e.id IN (
+			WHERE e.type NOT IN ('execution','task')
+			  AND e.id IN (
 				SELECT e2.id FROM entities e2
 				LEFT JOIN relationships r ON r.valid_to IS NULL
 					AND (r.source_id = e2.id OR r.target_id = e2.id)
+				WHERE e2.type NOT IN ('execution','task')
 				GROUP BY e2.id
 				ORDER BY count(r.type) DESC, e2.slug
 				LIMIT $1

internal/httpapi/server.go

@@ -237,6 +237,11 @@ func NewHandler(ctx context.Context, pool *db.Pool, cfg config.Config) http.Hand
 	r.With(combinedAuth(cfg, false)).Get("/api/v1/knowledge/orphans", s.serveKnowledgeOrphans)
 	r.With(combinedAuth(cfg, false)).Post("/api/v1/knowledge/merge", s.serveMergeKnowledge)
 
+	// Drift audit: read-only DB-side report of orphan checks, checks on
+	// retired targets, stuck down/unknown probes, unmonitored declared types,
+	// and dangling edges. Companion to the knowledge-graph-audit skill.
+	r.With(combinedAuth(cfg, false)).Get("/api/v1/audit/drift", s.serveAuditDrift)
+
 	// Custom (non-OpenAPI) routes: the global activity feed (recency-ordered,
 	// unlike ListExecutions which sorts by target for pagination) and the
 	// per-session "what did this session do" digest.

internal/mcp/server.go

@@ -5,7 +5,6 @@ package mcp
 import (
 	"bytes"
 	"context"
-	"encoding/base64"
 	"encoding/json"
 	"fmt"
 	"html"
@@ -25,6 +24,7 @@ import (
 	"github.com/dtoro/oikos/internal/execlog"
 	"github.com/dtoro/oikos/internal/observability"
 	"github.com/dtoro/oikos/internal/policy"
+	"github.com/dtoro/oikos/internal/remote"
 	"github.com/google/jsonschema-go/jsonschema"
 	"github.com/google/uuid"
 	"github.com/modelcontextprotocol/go-sdk/mcp"
@@ -461,31 +461,12 @@ func sshExecStream(ctx context.Context, host, user, command string, sink execlog
 	}
 }
 
-func resolveHost(ctx context.Context, pool *db.Pool, entitySlug string) (hostIP string, sshUser string, err error) {
-	var attrs string
-	err = pool.QueryRow(ctx, "SELECT attributes::text FROM entities WHERE slug = $1", entitySlug).Scan(&attrs)
-	if err != nil {
-		return "", "", fmt.Errorf("entity not found: %s", entitySlug)
-	}
-
-	var m map[string]interface{}
-	if err := json.Unmarshal([]byte(attrs), &m); err != nil {
-		return "", "", fmt.Errorf("parse attributes: %w", err)
-	}
-
-	if ip, ok := m["lan_ip"].(string); ok && ip != "" {
-		return ip, sshUser, nil
-	}
-	if mesh, ok := m["mesh"].(map[string]interface{}); ok {
-		for _, proto := range []string{"netbird", "tailscale"} {
-			if p, ok := mesh[proto].(map[string]interface{}); ok {
-				if ip, ok := p["ip"].(string); ok && ip != "" {
-					return ip, sshUser, nil
-				}
-			}
-		}
-	}
-	return "", "", fmt.Errorf("no IP found for %s", entitySlug)
+// resolveHost resolves a host:<slug> to its reachable IP and SSH user. A thin
+// wrapper over the shared resolver (internal/remote), kept so slug-based
+// callers keep working; the shared resolver also prefers public_ipv4 over
+// mesh and honors a per-entity ssh.user.
+func resolveHost(ctx context.Context, pool *db.Pool, entitySlug string) (hostIP string, sshUserOut string, err error) {
+	return remote.ResolveHost(ctx, pool, entitySlug, sshUser)
 }
 
 // htmlTagRe strips HTML tags for the naive text extraction in httpGet.
@@ -564,109 +545,28 @@ func isPrivateHost(host string) bool {
 // connection: identity for a host, `pct exec <pve_id> -- ...` for an LXC,
 // `qm guest exec <pve_id> -- ...` for a VM.
 //
-// The lxc.attributes.host value is stored WITHOUT a "host:" prefix (e.g.
-// "strong", not "host:strong") — see pct_create's entity registration. The
-// pre-existing pct_exec handler queried resolveHost with that bare value
-// directly, which can never match a "host:*" slug and always fails; this
-// prefixes it correctly.
-//
-// vm: support (2026-07-18): VMs in inventory.yaml carry `pve_id` and a `host`
-// attribute (or a `hosts` relationship) just like LXCs, but they're reached
-// via `qm guest exec` instead of `pct exec`. Previously the agent had to
-// SSH-hop via `host:hubris` to reach a VM (e.g. `ssh root@<vm_ip> '...'`),
-// which broke on nested shell quoting and forced manual escaping workarounds
-// — see plans/2026-07-18-session-review-three-sessions.md P1.6. A VM's
-// `host` attribute is optional: if absent, fall back to looking up the
-// `hosts` relationship on the VM entity, then to hubris (the documented
-// default Proxmox host) — same fallback chain as LXCs.
+// Delegates to the shared resolver (internal/remote), the single path used by
+// both the MCP `run` tool and the scheduler's checks. The historical notes
+// (host attr without prefix, vm host-resolution chain, nested-quoting
+// handling via base64) all still hold — they now live in remote.guestWrap.
 func resolveExecTarget(ctx context.Context, pool *db.Pool, targetSlug string) (host, user string, wrap func(cmd string) string, err error) {
-	if strings.HasPrefix(targetSlug, "host:") {
-		host, user, err = resolveHost(ctx, pool, targetSlug)
-		return host, user, func(cmd string) string { return cmd }, err
+	et, err := remote.ResolveExecTarget(ctx, pool, targetSlug, sshUser)
+	if err != nil {
+		return "", "", nil, err
 	}
-	if strings.HasPrefix(targetSlug, "lxc:") {
-		var pveID, hostAttr string
-		// COALESCE the host column: many older LXC entities (seeded from
-		// inventory, not provisioned by pct_create) have pve_id but no host
-		// attribute at all. Scanning a SQL NULL into a plain string errors
-		// the whole row, wrongly reporting "missing pve_id" even when it was
-		// present — COALESCE avoids the NULL, "" is handled below.
-		if qerr := pool.QueryRow(ctx, "SELECT attributes->>'pve_id', COALESCE(attributes->>'host', '') FROM entities WHERE slug = $1", targetSlug).Scan(&pveID, &hostAttr); qerr != nil || pveID == "" {
-			return "", "", nil, fmt.Errorf("LXC not found or missing pve_id: %s", targetSlug)
-		}
-		hostSlug := resolveProxmoxHostSlug(ctx, pool, targetSlug, hostAttr)
-		host, user, err = resolveHost(ctx, pool, hostSlug)
-		id := pveID
-		return host, user, func(cmd string) string {
-			b64 := base64.StdEncoding.EncodeToString([]byte(cmd))
-			return fmt.Sprintf("pct exec %s -- bash -c 'echo %s | base64 -d | bash'", id, b64)
-		}, err
-	}
-	if strings.HasPrefix(targetSlug, "vm:") {
-		// VMs: same host-resolution chain as LXCs (attributes.host →
-		// `hosts` relationship → hubris default), but reached via
-		// `qm guest exec` instead of `pct exec`. Requires the QEMU
-		// guest agent running inside the VM (the standard Proxmox
-		// setup; ZimaOS/HAOS in this fleet already have it).
-		var pveID, hostAttr string
-		if qerr := pool.QueryRow(ctx, "SELECT attributes->>'pve_id', COALESCE(attributes->>'host', '') FROM entities WHERE slug = $1", targetSlug).Scan(&pveID, &hostAttr); qerr != nil || pveID == "" {
-			return "", "", nil, fmt.Errorf("VM not found or missing pve_id: %s", targetSlug)
-		}
-		hostSlug := resolveProxmoxHostSlug(ctx, pool, targetSlug, hostAttr)
-		host, user, err = resolveHost(ctx, pool, hostSlug)
-		id := pveID
-		return host, user, func(cmd string) string {
-			b64 := base64.StdEncoding.EncodeToString([]byte(cmd))
-			// `qm guest exec <id> -- /bin/bash -c '...'` returns JSON by
-			// default; pipe through `jq -r .out` if available, else cat.
-			// The base64 round-trip mirrors the LXC path so nested quoting
-			// (the original VM-target pain point — session 55927f0a) is
-			// handled identically to LXC dispatch.
-			return fmt.Sprintf(
-				"qm guest exec %s -- /bin/bash -c 'echo %s | base64 -d | bash' | jq -r '.out // .err // empty' 2>/dev/null || qm guest exec %s -- /bin/bash -c 'echo %s | base64 -d | bash'",
-				id, b64, id, b64)
-		}, err
-	}
-	return "", "", nil, fmt.Errorf("unsupported target %q: must be host:<slug>, lxc:<slug>, or vm:<slug>", targetSlug)
+	return et.Host, et.User, et.Wrap, nil
 }
 
 // resolveProxmoxHostSlug resolves the Proxmox host slug that owns a given
-// LXC/VM target. Resolution order:
-//  1. hostAttr if non-empty (the entity's attributes.host — stored without
-//     "host:" prefix in inventory.yaml and pct_create).
-//  2. the `hosts` relationship on the entity (e.g. host:hubris → vm:zimaos),
-//     looked up in the relationships table — the canonical graph source.
-//  3. "hubris" as a documented default Proxmox host fallback.
-//
-// Returns a slug with the "host:" prefix attached, ready for resolveHost.
-// Extracted from the inline LXC path (2026-07-18) so the VM path shares the
-// same chain — see plans/2026-07-18-session-review-three-sessions.md P1.6.
+// LXC/VM target (see internal/remote.ResolveProxmoxHostSlug for the chain).
+// This slug-based wrapper looks up the entity id so slug callers keep working;
+// the shared resolver takes an id directly.
 func resolveProxmoxHostSlug(ctx context.Context, pool *db.Pool, entitySlug, hostAttr string) string {
-	hostSlug := strings.TrimSpace(hostAttr)
-	if hostSlug == "" {
-		// Fall back to the `hosts` relationship — the graph edge from
-		// the Proxmox host to this LXC/VM. This is the canonical source
-		// for "who owns this VM" in inventory.yaml; the `host` attribute
-		// is a denormalized shortcut that not every entity has.
-		var relHostSlug string
-		// hosts relationship: source=host, target=lxc/vm. Look up the
-		// source slug given the target.
-		if err := pool.QueryRow(ctx, `
-			SELECT e.slug FROM relationships r
-			JOIN entities e ON e.id = r.source_id
-			WHERE r.target_id = (SELECT id FROM entities WHERE slug = $1)
-			  AND r.type = 'hosts' AND r.valid_to IS NULL
-			LIMIT 1`, entitySlug).Scan(&relHostSlug); err == nil && relHostSlug != "" {
-			hostSlug = relHostSlug
-		}
+	var id uuid.UUID
+	if err := pool.QueryRow(ctx, "SELECT id FROM entities WHERE slug = $1", entitySlug).Scan(&id); err != nil {
+		id = uuid.Nil
 	}
-	if hostSlug == "" {
-		hostSlug = "hubris" // documented default Proxmox host when unset
-	}
-	if !strings.HasPrefix(hostSlug, "host:") {
-		hostSlug = "host:" + hostSlug
-	}
-	return hostSlug
+	return remote.ResolveProxmoxHostSlug(ctx, pool, id, hostAttr)
 }
 
 // classifyAndGate is the shared classify→execute-or-queue path for every

internal/mcp/tools.go

@@ -6,6 +6,7 @@ import (
 	"fmt"
 	"strings"
 
+	"github.com/dtoro/oikos/internal/audit"
 	"github.com/dtoro/oikos/internal/db"
 	"github.com/dtoro/oikos/internal/policy"
 	"github.com/google/uuid"
@@ -782,6 +783,14 @@ func allTools(pool *db.Pool, agentID uuid.UUID) []toolReg {
 		`), "fleet_snapshot"), nil
 		}},
 
+		{tool: &mcp.Tool{Name: "audit_knowledge_graph", Description: "Read-only drift report over the knowledge graph and monitoring: orphan check entities, checks targeting deprecated/destroyed entities, probes stuck down/unknown, unmonitored declared entity types, and live edges pointing at destroyed targets. Returns ranked findings with a suggested remediation runbook each. Use this to validate the graph is complete and consistent before trusting health/blast-radius answers. Does NOT mutate anything.",
+			InputSchema: objSchema(),
+		}, handler: func(ctx context.Context, req *mcp.CallToolRequest) (*mcp.CallToolResult, error) {
+			findings, summary := audit.Report(ctx, pool)
+			b, _ := json.Marshal(map[string]any{"findings": findings, "summary": summary})
+			return textResult(string(b)), nil
+		}},
+
 		{tool: &mcp.Tool{Name: "list_my_secrets", Description: "List secrets accessible to this client by public key",
 			InputSchema: objSchema(prop{"caller_pubkey", "string", "Age public key of the caller (optional)"}),
 		}, handler: func(ctx context.Context, req *mcp.CallToolRequest) (*mcp.CallToolResult, error) {

internal/remote/remote.go

@@ -0,0 +1,257 @@
+// Package remote resolves how to execute a command on a target entity and
+// turns a plain shell command into whatever must be sent over the SSH
+// connection that reaches it.
+//
+// The canonical access model: a host or workstation is reached by direct SSH
+// to its address; an LXC or VM is NEVER SSH'd into directly — it is reached
+// through its owning Proxmox host via `pct exec` / `qm guest exec`. One SSH
+// credential per host (the host's root key), no per-guest keys, sshd, or
+// lan_ip required for execution. Network probes (http/ping) still hit a
+// guest's lan_ip directly; only command execution host-hops.
+//
+// This is the single resolver shared by the scheduler's check execution and
+// the MCP `run` tool. Previously they diverged — the scheduler SSHed guests
+// directly (broken for headless/keyless/mesh-only guests), while MCP
+// host-hopped (working). Keeping one path keeps them in lockstep.
+package remote
+
+import (
+	"context"
+	"encoding/base64"
+	"encoding/json"
+	"fmt"
+	"strings"
+
+	"github.com/dtoro/oikos/internal/db"
+	"github.com/google/uuid"
+)
+
+// DefaultUser is the SSH user when an entity declares no ssh.user. The
+// Proxmox hosts and their guests are all administered as root.
+const DefaultUser = "root"
+
+// ExecTarget is a resolved execution endpoint: the SSH address and user to
+// connect to, plus Wrap, which rewrites a plain command for transport.
+type ExecTarget struct {
+	Host string
+	User string
+	// Wrap turns a plain shell command into the form that must be sent over
+	// the SSH connection to this target: the identity function for a host,
+	// `pct exec <id> -- bash -c 'echo <b64> | base64 -d | bash'` for an LXC,
+	// the `qm guest exec` equivalent for a VM. The base64 round-trip keeps
+	// nested quoting identical across both guest kinds.
+	Wrap func(cmd string) string
+}
+
+// IsGuest reports whether an entity type is reached via pct/qm exec through a
+// Proxmox host rather than by direct SSH. docker-container is reached via its
+// host's docker socket, not pct, so it is not a guest here.
+func IsGuest(entityType string) bool {
+	return entityType == "lxc" || entityType == "vm"
+}
+
+// ResolveHost resolves a `host:<slug>` to its reachable network address and
+// SSH user. Address preference: lan_ip, then public_ipv4, then mesh IP, then
+// mesh fqdn. Preferring public_ipv4 over mesh matters because the scheduler
+// container has no mesh interface — a standalone-server with only a mesh IP
+// (netbird-vps) was unreachable, and a public_ipv4 was sitting unused.
+//
+// fallbackUser is used when the entity declares no ssh.user; callers pass
+// their configured default (the scheduler uses "root", the MCP run tool uses
+// its configured OIKOS_SSH_USER).
+func ResolveHost(ctx context.Context, pool *db.Pool, hostSlug, fallbackUser string) (addr, user string, err error) {
+	var raw string
+	if err = pool.QueryRow(ctx, "SELECT attributes::text FROM entities WHERE slug = $1", hostSlug).Scan(&raw); err != nil {
+		return "", "", fmt.Errorf("entity not found: %s", hostSlug)
+	}
+	var m map[string]any
+	if err = json.Unmarshal([]byte(raw), &m); err != nil {
+		return "", "", fmt.Errorf("parse attributes for %s: %w", hostSlug, err)
+	}
+
+	if v, ok := m["lan_ip"].(string); ok && v != "" {
+		addr = v
+	} else if v, ok := m["public_ipv4"].(string); ok && v != "" {
+		addr = v
+	} else if mesh, ok := m["mesh"].(map[string]any); ok {
+		if nb, ok := mesh["netbird"].(map[string]any); ok {
+			if v, ok := nb["ip"].(string); ok && v != "" {
+				addr = v
+			} else if v, ok := nb["fqdn"].(string); ok && v != "" {
+				addr = v
+			}
+		}
+	}
+	if addr == "" {
+		return "", "", fmt.Errorf("no IP found for %s", hostSlug)
+	}
+
+	user = fallbackUser
+	if ssh, ok := m["ssh"].(map[string]any); ok {
+		if u, ok := ssh["user"].(string); ok && u != "" {
+			user = u
+		}
+	}
+	return addr, user, nil
+}
+
+// ResolveProxmoxHostSlug resolves the Proxmox host slug that owns a guest.
+// Resolution order: the hostAttr if non-empty (the entity's attributes.host,
+// stored without the "host:" prefix), the `hosts` relationship on the guest
+// (the canonical graph edge), then "hubris" as the documented default.
+//
+// entityID is the guest's entity id; the relationship lookup uses it
+// directly rather than a slug subquery.
+func ResolveProxmoxHostSlug(ctx context.Context, pool *db.Pool, entityID uuid.UUID, hostAttr string) string {
+	hostSlug := strings.TrimSpace(hostAttr)
+	if hostSlug == "" {
+		var relHostSlug string
+		if err := pool.QueryRow(ctx, `
+			SELECT e.slug FROM relationships r
+			JOIN entities e ON e.id = r.source_id
+			WHERE r.target_id = $1
+			  AND r.type = 'hosts' AND r.valid_to IS NULL
+			LIMIT 1`, entityID).Scan(&relHostSlug); err == nil && relHostSlug != "" {
+			hostSlug = relHostSlug
+		}
+	}
+	if hostSlug == "" {
+		hostSlug = "hubris" // documented default Proxmox host when unset
+	}
+	if !strings.HasPrefix(hostSlug, "host:") {
+		hostSlug = "host:" + hostSlug
+	}
+	return hostSlug
+}
+
+// ResolveExecTarget resolves a target slug (host:, lxc:, or vm:) to its
+// execution endpoint. This is the slug-based entry used by the MCP `run` tool.
+func ResolveExecTarget(ctx context.Context, pool *db.Pool, targetSlug, fallbackUser string) (ExecTarget, error) {
+	switch {
+	case strings.HasPrefix(targetSlug, "host:"):
+		addr, user, err := ResolveHost(ctx, pool, targetSlug, fallbackUser)
+		if err != nil {
+			return ExecTarget{}, err
+		}
+		return ExecTarget{Host: addr, User: user, Wrap: func(cmd string) string { return cmd }}, nil
+
+	case strings.HasPrefix(targetSlug, "lxc:"), strings.HasPrefix(targetSlug, "vm:"):
+		var (
+			id       uuid.UUID
+			pveID    string
+			typ      string
+			hostAttr string
+		)
+		if err := pool.QueryRow(ctx,
+			"SELECT id, type, attributes->>'pve_id', COALESCE(attributes->>'host','') FROM entities WHERE slug = $1",
+			targetSlug).Scan(&id, &typ, &pveID, &hostAttr); err != nil || pveID == "" {
+			return ExecTarget{}, fmt.Errorf("guest not found or missing pve_id: %s", targetSlug)
+		}
+		hostSlug := ResolveProxmoxHostSlug(ctx, pool, id, hostAttr)
+		addr, user, err := ResolveHost(ctx, pool, hostSlug, fallbackUser)
+		if err != nil {
+			return ExecTarget{}, err
+		}
+		return ExecTarget{Host: addr, User: user, Wrap: guestWrap(typ, pveID)}, nil
+	}
+	return ExecTarget{}, fmt.Errorf("unsupported target %q: must be host:<slug>, lxc:<slug>, or vm:<slug>", targetSlug)
+}
+
+// ResolveExecTargetForCheck resolves an execution endpoint keyed by the
+// target's id and type — the data the scheduler has at check-execution time
+// (check_defs carry target_id + target_type, not a slug). Guests route via
+// pct/qm exec; everything else (hosts, workstations, services resolved to
+// their hosting machine) is reached by direct SSH to the entity's own address.
+func ResolveExecTargetForCheck(ctx context.Context, pool *db.Pool, targetID uuid.UUID, targetType, fallbackUser string) (ExecTarget, error) {
+	if IsGuest(targetType) {
+		var (
+			pveID    string
+			hostAttr string
+		)
+		if err := pool.QueryRow(ctx,
+			"SELECT attributes->>'pve_id', COALESCE(attributes->>'host','') FROM entities WHERE id = $1",
+			targetID).Scan(&pveID, &hostAttr); err != nil || pveID == "" {
+			return ExecTarget{}, fmt.Errorf("guest %s missing pve_id", targetID)
+		}
+		hostSlug := ResolveProxmoxHostSlug(ctx, pool, targetID, hostAttr)
+		addr, user, err := ResolveHost(ctx, pool, hostSlug, fallbackUser)
+		if err != nil {
+			return ExecTarget{}, err
+		}
+		return ExecTarget{Host: addr, User: user, Wrap: guestWrap(targetType, pveID)}, nil
+	}
+
+	// Host-like target: reach it directly at its own address. Services and
+	// other non-host entities that reach here should already have had their
+	// host address baked into check config at seed time; this path covers
+	// host/workstation targets whose address is resolved live.
+	addr, user, err := resolveHostByID(ctx, pool, targetID, fallbackUser)
+	if err != nil {
+		return ExecTarget{}, err
+	}
+	return ExecTarget{Host: addr, User: user, Wrap: func(cmd string) string { return cmd }}, nil
+}
+
+// resolveHostByID is ResolveHost keyed by entity id.
+func resolveHostByID(ctx context.Context, pool *db.Pool, id uuid.UUID, fallbackUser string) (addr, user string, err error) {
+	var raw string
+	if err = pool.QueryRow(ctx, "SELECT attributes::text FROM entities WHERE id = $1", id).Scan(&raw); err != nil {
+		return "", "", fmt.Errorf("entity %s not found", id)
+	}
+	var m map[string]any
+	if err = json.Unmarshal([]byte(raw), &m); err != nil {
+		return "", "", fmt.Errorf("parse attributes: %w", err)
+	}
+	for _, key := range []string{"lan_ip", "public_ipv4", "mesh_ip"} {
+		if v, ok := m[key].(string); ok && v != "" {
+			addr = v
+			break
+		}
+	}
+	if addr == "" {
+		if mesh, ok := m["mesh"].(map[string]any); ok {
+			if nb, ok := mesh["netbird"].(map[string]any); ok {
+				if v, ok := nb["ip"].(string); ok && v != "" {
+					addr = v
+				} else if v, ok := nb["fqdn"].(string); ok && v != "" {
+					addr = v
+				}
+			}
+		}
+	}
+	if addr == "" {
+		return "", "", fmt.Errorf("no IP found for entity %s", id)
+	}
+	user = fallbackUser
+	if ssh, ok := m["ssh"].(map[string]any); ok {
+		if u, ok := ssh["user"].(string); ok && u != "" {
+			user = u
+		}
+	}
+	if u, ok := m["user"].(string); ok && u != "" && user == fallbackUser {
+		// Workstations carry their login as a top-level `user` attribute
+		// (mac-mini: user: dtoro), not under ssh.user. Take it only when no
+		// explicit ssh.user was set, so a host that genuinely wants root still
+		// gets root.
+		user = u
+	}
+	return addr, user, nil
+}
+
+// guestWrap builds the pct/qm exec wrapper for a guest of the given type.
+func guestWrap(entityType, pveID string) func(cmd string) string {
+	if entityType == "vm" {
+		return func(cmd string) string {
+			b64 := base64.StdEncoding.EncodeToString([]byte(cmd))
+			// `qm guest exec` returns JSON; pipe through jq for a clean stdout,
+			// falling back to the raw form. Mirrors the LXC base64 round-trip.
+			return fmt.Sprintf(
+				"qm guest exec %s -- /bin/bash -c 'echo %s | base64 -d | bash' | jq -r '.out // .err // empty' 2>/dev/null || qm guest exec %s -- /bin/bash -c 'echo %s | base64 -d | bash'",
+				pveID, b64, pveID, b64)
+		}
+	}
+	return func(cmd string) string {
+		b64 := base64.StdEncoding.EncodeToString([]byte(cmd))
+		return fmt.Sprintf("pct exec %s -- bash -c 'echo %s | base64 -d | bash'", pveID, b64)
+	}
+}

internal/remote/remote_test.go

@@ -0,0 +1,172 @@
+package remote
+
+import (
+	"context"
+	"encoding/base64"
+	"strings"
+	"testing"
+
+	"github.com/dtoro/oikos/internal/db"
+	"github.com/google/uuid"
+)
+
+// guestWrap and IsGuest are pure logic — always tested. The DB-backed
+// resolvers are integration tests guarded by OIKOS_TEST_DATABASE_URL, the
+// same convention as internal/scheduler/coverage_test.go.
+
+func TestIsGuest(t *testing.T) {
+	cases := map[string]bool{
+		"lxc": true, "vm": true,
+		"proxmox-host": false, "workstation": false,
+		"service": false, "docker-container": false,
+	}
+	for typ, want := range cases {
+		if got := IsGuest(typ); got != want {
+			t.Errorf("IsGuest(%q) = %v, want %v", typ, got, want)
+		}
+	}
+}
+
+func TestGuestWrapLXC(t *testing.T) {
+	w := guestWrap("lxc", "132")
+	out := w("/opt/oikos/checks/cpu_check.sh 'svc'")
+	if !strings.Contains(out, "pct exec 132 -- bash -c ") {
+		t.Fatalf("lxc wrap must use pct exec: %q", out)
+	}
+	if strings.Contains(out, "qm guest exec") {
+		t.Fatalf("lxc wrap must not use qm: %q", out)
+	}
+	// The base64 payload must round-trip to the original command.
+	i := strings.Index(out, "echo ")
+	j := strings.LastIndex(out, " | base64 -d | bash")
+	if i < 0 || j < 0 || j <= i {
+		t.Fatalf("cannot locate base64 payload in %q", out)
+	}
+	dec, err := base64.StdEncoding.DecodeString(out[i+len("echo ") : j])
+	if err != nil {
+		t.Fatalf("decode payload: %v", err)
+	}
+	if string(dec) != "/opt/oikos/checks/cpu_check.sh 'svc'" {
+		t.Fatalf("round-trip mismatch: %q", string(dec))
+	}
+}
+
+func TestGuestWrapVM(t *testing.T) {
+	w := guestWrap("vm", "108")
+	out := w("uname -a")
+	if !strings.Contains(out, "qm guest exec 108") {
+		t.Fatalf("vm wrap must use qm guest exec: %q", out)
+	}
+}
+
+func TestResolveExecTargetUnsupported(t *testing.T) {
+	// No DB needed: an unsupported slug prefix errors before any query.
+	if _, err := ResolveExecTarget(context.Background(), nil, "service:gitea", DefaultUser); err == nil {
+		t.Fatal("expected error for unsupported target prefix")
+	}
+}
+
+// --- integration tests (require a real Postgres) ---
+
+func newRemotePool(t *testing.T) *db.Pool {
+	t.Helper()
+	base := testDatabaseURL(t)
+	return createTestDB(t, base)
+}
+
+func testDatabaseURL(t *testing.T) string {
+	t.Helper()
+	u := getenvOrDefault("OIKOS_TEST_DATABASE_URL", "")
+	if u == "" {
+		t.Skip("OIKOS_TEST_DATABASE_URL not set — skipping integration test")
+	}
+	return u
+}
+
+func TestResolveHostPrefersLAN(t *testing.T) {
+	pool := newRemotePool(t)
+	ctx := context.Background()
+	mustExec(t, pool, ctx, `INSERT INTO entities (id, slug, type, name, state, attributes, version, created_at, updated_at)
+		VALUES ($1,'host:x','proxmox-host','x','active','{"lan_ip":"10.0.0.1","public_ipv4":"1.2.3.4","mesh":{"netbird":{"ip":"100.64.0.1"}}}'::jsonb,1,now(),now())`,
+		uuid.New())
+
+	addr, user, err := ResolveHost(ctx, pool, "host:x", DefaultUser)
+	if err != nil {
+		t.Fatalf("ResolveHost: %v", err)
+	}
+	if addr != "10.0.0.1" {
+		t.Errorf("addr = %q, want lan_ip 10.0.0.1", addr)
+	}
+	if user != "root" {
+		t.Errorf("user = %q, want root", user)
+	}
+}
+
+func TestResolveHostFallsBackToPublicIPv4(t *testing.T) {
+	// netbird-vps: no lan_ip, has public_ipv4 + mesh ip. Must prefer
+	// public_ipv4 — the scheduler container has no mesh interface.
+	pool := newRemotePool(t)
+	ctx := context.Background()
+	mustExec(t, pool, ctx, `INSERT INTO entities (id, slug, type, name, state, attributes, version, created_at, updated_at)
+		VALUES ($1,'host:vps','standalone-server','vps','active','{"public_ipv4":"82.165.190.79","mesh":{"netbird":{"ip":"100.122.165.149"}}}'::jsonb,1,now(),now())`,
+		uuid.New())
+
+	addr, _, err := ResolveHost(ctx, pool, "host:vps", DefaultUser)
+	if err != nil {
+		t.Fatalf("ResolveHost: %v", err)
+	}
+	if addr != "82.165.190.79" {
+		t.Errorf("addr = %q, want public_ipv4 (mesh unreachable from container)", addr)
+	}
+}
+
+func TestResolveExecTargetForCheckLXCRoutesViaHost(t *testing.T) {
+	// An LXC guest with a `hosts` edge to a proxmox host must resolve to the
+	// HOST's address (the host-hop target), wrapped as `pct exec`.
+	pool := newRemotePool(t)
+	ctx := context.Background()
+	hostID := uuid.New()
+	guestID := uuid.New()
+	mustExec(t, pool, ctx, `INSERT INTO entities (id, slug, type, name, state, attributes, version, created_at, updated_at)
+		VALUES ($1,'host:hubris','proxmox-host','hubris','active','{"lan_ip":"192.168.8.77"}'::jsonb,1,now(),now())`, hostID)
+	mustExec(t, pool, ctx, `INSERT INTO entities (id, slug, type, name, state, attributes, version, created_at, updated_at)
+		VALUES ($1,'lxc:rclone','lxc','rclone','active','{"pve_id":"132"}'::jsonb,1,now(),now())`, guestID)
+	mustExec(t, pool, ctx, `INSERT INTO relationships (source_id, target_id, type, valid_from, created_at)
+		VALUES ($1,$2,'hosts',now(),now())`, hostID, guestID)
+
+	et, err := ResolveExecTargetForCheck(ctx, pool, guestID, "lxc", DefaultUser)
+	if err != nil {
+		t.Fatalf("ResolveExecTargetForCheck: %v", err)
+	}
+	if et.Host != "192.168.8.77" {
+		t.Errorf("Host = %q, want proxmox host lan_ip 192.168.8.77 (host-hop)", et.Host)
+	}
+	out := et.Wrap("/opt/oikos/checks/cpu_check.sh")
+	if !strings.Contains(out, "pct exec 132") {
+		t.Errorf("guest wrap must use pct exec 132, got %q", out)
+	}
+}
+
+func TestResolveExecTargetForCheckHostIsDirect(t *testing.T) {
+	// A host-like target resolves to its own address with identity wrap.
+	pool := newRemotePool(t)
+	ctx := context.Background()
+	hid := uuid.New()
+	mustExec(t, pool, ctx, `INSERT INTO entities (id, slug, type, name, state, attributes, version, created_at, updated_at)
+		VALUES ($1,'ws:mini','workstation','mini','active','{"lan_ip":"192.168.178.182","user":"dtoro"}'::jsonb,1,now(),now())`, hid)
+
+	et, err := ResolveExecTargetForCheck(ctx, pool, hid, "workstation", DefaultUser)
+	if err != nil {
+		t.Fatalf("ResolveExecTargetForCheck: %v", err)
+	}
+	if et.Host != "192.168.178.182" {
+		t.Errorf("Host = %q, want 192.168.178.182", et.Host)
+	}
+	// Workstation's top-level `user` must be honored (the mac-mini fix).
+	if et.User != "dtoro" {
+		t.Errorf("User = %q, want dtoro (top-level user attr)", et.User)
+	}
+	if cmd := et.Wrap("uptime"); cmd != "uptime" {
+		t.Errorf("host wrap must be identity, got %q", cmd)
+	}
+}

internal/remote/testutil_test.go

@@ -0,0 +1,68 @@
+package remote
+
+import (
+	"context"
+	"fmt"
+	"math/rand"
+	"os"
+	"strings"
+	"testing"
+
+	"github.com/dtoro/oikos/internal/db"
+	"github.com/jackc/pgx/v5"
+)
+
+// createTestDB provisions a throwaway migrated database off baseURL, the same
+// convention as internal/scheduler/coverage_test.go. The base URL must point
+// at a Postgres superuser-capable connection.
+func createTestDB(t *testing.T, baseURL string) *db.Pool {
+	t.Helper()
+	ctx := context.Background()
+
+	admin, err := pgx.Connect(ctx, baseURL)
+	if err != nil {
+		t.Fatalf("connect admin: %v", err)
+	}
+	dbName := fmt.Sprintf("oikos_rem_%08x", rand.Int63())
+	if _, err := admin.Exec(ctx, "CREATE DATABASE "+dbName); err != nil {
+		admin.Close(ctx)
+		t.Fatalf("create test db: %v", err)
+	}
+	admin.Close(ctx)
+
+	at := strings.LastIndex(baseURL, "/")
+	testURL := baseURL[:at+1] + dbName
+	if q := strings.Index(baseURL[at:], "?"); q >= 0 {
+		testURL += baseURL[at+q:]
+	}
+
+	pool, err := db.New(ctx, testURL)
+	if err != nil {
+		t.Fatalf("connect test db: %v", err)
+	}
+	if err := pool.Migrate(ctx); err != nil {
+		t.Fatalf("migrate: %v", err)
+	}
+	t.Cleanup(func() {
+		pool.Close()
+		if admin, err := pgx.Connect(ctx, baseURL); err == nil {
+			admin.Exec(ctx, "DROP DATABASE IF EXISTS "+dbName+" WITH (FORCE)")
+			admin.Close(ctx)
+		}
+	})
+	return pool
+}
+
+func getenvOrDefault(key, def string) string {
+	if v := os.Getenv(key); v != "" {
+		return v
+	}
+	return def
+}
+
+func mustExec(t *testing.T, pool *db.Pool, ctx context.Context, q string, args ...any) {
+	t.Helper()
+	if _, err := pool.Exec(ctx, q, args...); err != nil {
+		t.Fatalf("exec %s: %v", q, err)
+	}
+}

internal/scheduler/coverage.go

@@ -85,7 +85,16 @@ func coverageSweep(ctx context.Context, pool *db.Pool) {
 		case !mon.Declared:
 			undeclared++
 		case mon.None():
-			// Explicitly unmonitorable. Nothing to say.
+			// Explicitly unmonitorable. Nothing to raise — but a type that
+			// USED to declare monitoring (e.g. dns-zone, [dns]→none) may have
+			// open `unmonitored` signals from before the change. They are no
+			// longer a gap, so close them; otherwise they linger forever,
+			// because resolveCoverageSignal only runs from the hasCheck path
+			// and a None() entity never gains a check.
+			if resolveCoverageSignal(ctx, pool, e.id) {
+				resolved++
+				slog.Info("scheduler: type now unmonitorable, resolving stale signal", "entity", e.slug)
+			}
 		case e.hasCheck:
 			if resolveCoverageSignal(ctx, pool, e.id) {
 				resolved++

internal/scheduler/scheduler.go

@@ -23,6 +23,7 @@ import (
 	"github.com/dtoro/oikos/internal/db"
 	"github.com/dtoro/oikos/internal/db/sqlcgen"
 	"github.com/dtoro/oikos/internal/observability"
+	"github.com/dtoro/oikos/internal/remote"
 	"github.com/google/uuid"
 	"golang.org/x/sync/errgroup"
 	"golang.org/x/sys/unix"
@@ -111,7 +112,7 @@ func runCheck(ctx context.Context, pool *db.Pool, cd sqlcgen.ListEnabledCheckDef
 	q := sqlcgen.New(pool)
 	start := time.Now()
 
-	result := executeCheck(ctx, cd)
+	result := executeCheck(ctx, pool, cd)
 
 	// Stamp the run before processing the result: due-ness must advance even
 	// when a check fails, or a permanently failing check would be re-run on
@@ -277,8 +278,10 @@ type checkResult struct {
 	err        error
 }
 
-// executeCheck dispatches to the appropriate checker by kind.
-func executeCheck(ctx context.Context, cd sqlcgen.ListEnabledCheckDefsRow) checkResult {
+// executeCheck dispatches to the appropriate checker by kind. pool is needed
+// by the ssh-script path, which resolves the target's execution endpoint
+// (guests route through their Proxmox host; see internal/remote).
+func executeCheck(ctx context.Context, pool *db.Pool, cd sqlcgen.ListEnabledCheckDefsRow) checkResult {
 	switch cd.Kind {
 	case "http":
 		return checkHTTP(ctx, cd)
@@ -291,7 +294,7 @@ func executeCheck(ctx context.Context, cd sqlcgen.ListEnabledCheckDefsRow) check
 	case "ping":
 		return checkPing(ctx, cd)
 	case "ssh-script":
-		return checkSSHScript(ctx, cd)
+		return checkSSHScript(ctx, pool, cd)
 	case "backup-freshness":
 		return checkBackupFreshness(ctx, cd)
 	default:
@@ -706,8 +709,16 @@ func parsePingLatency(output []byte) float64 {
 	return val
 }
 
-// checkSSHScript executes an allowlisted script on a remote host via SSH.
-func checkSSHScript(ctx context.Context, cd sqlcgen.ListEnabledCheckDefsRow) checkResult {
+// checkSSHScript executes an allowlisted script on a remote target via SSH.
+//
+// Routing follows the canonical access model (internal/remote): an LXC or VM
+// is NEVER SSH'd into directly — it is reached through its Proxmox host via
+// `pct exec`/`qm guest exec`, so a guest needs no lan_ip, sshd, or authorized
+// key of its own. Hosts and workstations are reached by direct SSH, resolved
+// live so a workstation's login (mac-mini: `user: dtoro`) is honored without
+// a re-seed. Services and other entities fall back to the host address baked
+// into check config at seed time (their hosting container's address).
+func checkSSHScript(ctx context.Context, pool *db.Pool, cd sqlcgen.ListEnabledCheckDefsRow) checkResult {
 	cfg := struct {
 		Host   string `json:"host"`
 		Port   int    `json:"port"`
@@ -725,12 +736,6 @@ func checkSSHScript(ctx context.Context, cd sqlcgen.ListEnabledCheckDefsRow) che
 	if cfg.Host == "" || cfg.Script == "" {
 		return checkResult{health: "healthy"}
 	}
-	if cfg.Port == 0 {
-		cfg.Port = 22
-	}
-	if cfg.User == "" {
-		cfg.User = sshUser
-	}
 
 	if !allowlistedScript(cfg.Script) {
 		return checkResult{
@@ -753,13 +758,45 @@ func checkSSHScript(ctx context.Context, cd sqlcgen.ListEnabledCheckDefsRow) che
 		// the remote command. The script name itself is allowlisted above.
 		scriptPath += " '" + strings.ReplaceAll(cfg.Args, "'", `'\''`) + "'"
 	}
-	port := strconv.Itoa(cfg.Port)
 
-	output, err := sshExec(ctx, cfg.Host, port, cfg.User, scriptPath, timeout)
+	// Resolve the execution endpoint. Guests host-hop; host/workstation types
+	// resolve their address + user live; everything else uses the baked config.
+	host, port, user := cfg.Host, strconv.Itoa(oru(cfg.Port, 22)), orStr(cfg.User, sshUser)
+	wrap := func(cmd string) string { return cmd }
+	targetType := ""
+	if cd.TargetType != nil {
+		targetType = *cd.TargetType
+	}
+	if cd.TargetID != nil {
+		switch {
+		case remote.IsGuest(targetType):
+			et, err := remote.ResolveExecTargetForCheck(ctx, pool, *cd.TargetID, targetType, sshUser)
+			if err != nil {
+				return checkResult{
+					health: "down", signalKind: "ssh-script",
+					evidence: fmt.Sprintf("route guest %s: %v", cd.EntitySlug, err), err: err,
+				}
+			}
+			host, port, user, wrap = et.Host, "22", et.User, et.Wrap
+		case isMachine(targetType):
+			et, err := remote.ResolveExecTargetForCheck(ctx, pool, *cd.TargetID, targetType, sshUser)
+			if err == nil {
+				host, port, user, wrap = et.Host, "22", et.User, et.Wrap
+			} else {
+				// Log the resolution failure so an opaque ssh "down" doesn't
+				// hide that the real cause was host/user resolution (e.g. a
+				// missing attribute), then fall back to the baked config below.
+				slog.Warn("scheduler: machine target resolution failed, using baked config",
+					"entity", cd.EntitySlug, "target_type", targetType, "error", err)
+			}
+		}
+	}
+
+	output, err := sshExec(ctx, host, port, user, wrap(scriptPath), timeout)
 	if err != nil {
 		return checkResult{
 			health: "down", signalKind: "ssh-script",
-			evidence: fmt.Sprintf("ssh %s:%s %s: %v", cfg.Host, strconv.Itoa(cfg.Port), cfg.Script, err),
+			evidence: fmt.Sprintf("ssh %s:%s %s: %v", host, port, cfg.Script, err),
 			err:      err,
 		}
 	}
@@ -797,6 +834,32 @@ func checkSSHScript(ctx context.Context, cd sqlcgen.ListEnabledCheckDefsRow) che
 	}
 }
 
+// isMachine reports whether a target type is a physical/virtual machine that
+// should be reached by direct SSH at its own resolved address (rather than the
+// baked hosting-container address a service uses). These are the machine
+// subtypes in the ontology.
+func isMachine(entityType string) bool {
+	switch entityType {
+	case "proxmox-host", "standalone-server", "workstation", "appliance":
+		return true
+	}
+	return false
+}
+
+// oru returns v when nonzero, else def. orStr returns v when non-empty, else def.
+func oru(v, def int) int {
+	if v != 0 {
+		return v
+	}
+	return def
+}
+func orStr(v, def string) string {
+	if v != "" {
+		return v
+	}
+	return def
+}
+
 var scriptNameRe = regexp.MustCompile(`^[a-z][a-z0-9_-]+\.sh$`)
 
 func allowlistedScript(name string) bool {

plans/2026-07-29-health-check-reality-and-knowledge-graph.md

@@ -0,0 +1,410 @@
+# Plan: Make health reflect reality + complete the knowledge graph
+
+Status: ready for implementation · Created 2026-07-29
+
+## Context
+
+`ws:mac-mini` reports health `down` despite being the healthy control-plane host.
+Investigation showed the problem is systemic, not local: **49 enabled checks report
+`down`**, almost all `ssh-script`, because the resource/updates probes assume
+**scripts are deployed at `/opt/oikos/checks/` AND root SSH works on every target** —
+both false for macOS, non-enrolled LXCs, and mesh-only entities. The knowledge graph
+also has real gaps (unmodeled TLS certs, empty `skills` table, seed drift, a capped
+topology view).
+
+The DB is the source of truth; live state was verified via the REST API
+(`Authorization: Bearer $OIKOS_MCP_BEARER_TOKEN`, token in `oikos-api-1` container env)
+and `docker exec oikos-postgres-1 psql`. Direct psql access is available for cleanup.
+
+## Decisions (confirmed with operator)
+
+1. **Monitoring philosophy: make checks work everywhere** — via the proven `pct exec`/
+   `qm guest exec` host-routing the MCP `run` tool already uses (no per-guest SSH keys),
+   plus deploy the check scripts INTO each guest and make them macOS-aware. Hosts/workstations
+   use direct SSH with the correct per-target user.
+2. **Canonical host-hop access** — `pct exec`/`qm guest exec` through the proxmox host is
+   the ONLY execution path for any LXC/VM command (scheduler + MCP `run` + agent). Direct
+   guest SSH is retired for execution; `lan_ip` stays for network probes only. (A1.)
+3. **Auto-provision monitoring for new entities** — wire script-deploy + the
+   `health-check-answering` lifecycle gate into entity creation so any entity Nomos creates
+   becomes monitorable with zero manual steps (Track E).
+4. **Lifecycle gate: skip monitoring for `deprecated`/`destroyed` targets** — no
+   permanent false alarms from retired things.
+5. **Knowledge graph: address ALL gaps** — model TLS certificates, fix dns-zone gap,
+   re-export seeds, seed skills, raise graph cap.
+6. **Read-only audit skill** — a `read_only` operator skill discovers live infra and diffs
+   it against the DB graph, producing a ranked drift report; the operator acts on findings
+   via existing lifecycle runbooks. No auto-fix. (Track F.)
+
+## Findings (evidence)
+
+### A. Health-check reality gaps (49 checks `down`)
+
+**Root cause is a routing mismatch, verified live (tests use the scheduler's own key
+`-i /etc/oikos/ssh_key`, not a default-key test):**
+
+The MCP `run` tool already reaches every guest correctly via
+`resolveExecTarget` (`internal/mcp/server.go:582`): resolve the proxmox host
+(`attributes.host` → `hosts` edge → hubris default), SSH there, run
+`pct exec <pve_id> -- bash -c 'echo <b64> | base64 -d | bash'` (VMs: `qm guest exec`).
+That path needs **no per-guest lan_ip, no per-guest authorized_keys, no per-guest sshd**.
+
+The **scheduler's `checkSSHScript` does not use it** — it SSHes directly to each
+entity's own resolved address (`internal/scheduler/scheduler.go:758`,
+`internal/checkdefaults/defaults.go:376 resolveHost`) and runs
+`/opt/oikos/checks/<script>`. That is the bug. Decomposed by class:
+
+| Class | Targets (verified) | Root cause |
+|---|---|---|
+| **Guests reached wrong** | `lxc:rclone` (mesh-only, no lan_ip), `lxc:nfs-export` (192.168.8.200: **ssh port 22 timeout** — no sshd), `lxc:teddycloud` (**key not authorized** — "not a homelab client"), `lxc:grimmory/romm/seanime` (strong: pct-exec reachable, **scripts not inside**) | scheduler SSHes the guest directly; should route via proxmox host `pct exec` like `resolveExecTarget`. rclone is correctly parented on hubris (`hosts` edge verified) and IS reachable via `pct exec 132` — the mesh fqdn is a red herring. |
+| macOS host | `ws:mac-mini` (5 resource/updates checks `down`) | root SSH disabled (macOS); `user: dtoro` never read by resolver (`defaults.go:406` reads `attrs["ssh"]["user"]` only); scripts not deployed; scripts Linux-only |
+| External / mesh-only | `host:netbird-vps` (no lan_ip; mesh unreachable from container) | `resolveHost` picks mesh IP over `public_ipv4` (`defaults.go:376`); sshd also "locked to hubris pubkey" |
+| Dead route | `ingress:secrets.hubris.network` http `down` | `service:secrets-issuance` is `deprecated` but its ingress check still enabled — no lifecycle gate |
+| ICMP-blocked | `vm:haos` ping `down` while up | HAOS blocks ICMP |
+
+**Working** (prove the host-SSH model is sound): `host:hubris`, `host:strong` SSH with
+the scheduler key → **SCRIPTS_PRESENT**; `lxc:gitea` direct-SSH → **SCRIPTS_PRESENT**
+(it's a homelab client with root key + scripts). So the host hop is the reliable path.
+
+**Parentage verified correct** (all `hosts` edges checked in DB): strong guests on
+strong, hubris guests on hubris. No misplaced parents — the gap is routing + in-guest
+script deployment, not topology.
+
+Health aggregation itself is correct: `WorstHealthForTarget`
+(`internal/db/sqlcgen/operations.sql.go:1472`) = worst enabled check. One failing
+ssh-script drags an otherwise-healthy entity to `down`.
+
+### B. Dead/stale data
+
+- **24 orphan check_defs** + check entities, slugs `^check:(ping|ssh-script|disk):[0-9a-f]{8}$`
+  (e.g. `check:ssh-script:0d31fdd1`), `enabled=false`, `last_health=NULL`, `state=NULL`.
+  Leftover from the old `shortSlug()` collision bug (fixed in `defaults.go:263`).
+- `service:secrets-issuance` = `deprecated`; `ingress:secrets.hubris.network` still
+  routes to it and alarms permanently.
+
+### C. Knowledge-graph gaps
+
+- **TLS certificates unmodeled**: `certificate` type + `uses-certificate` edge + `cert-expiry`
+  checker all exist, but **0** certificate entities. Cert expiry is invisible.
+- **`dns-zone` declares `monitoring: [dns]`** (`seeds/ontology.yaml:382`) but no `dns`
+  checker exists → every zone is an `unmonitored` signal.
+- **Seed drift**: 23 `dns-record` entities in DB, 0 in `seeds/inventory.yaml`.
+- **`skills` table = 0** despite `.agents/skills/*/SKILL.md` on disk (runbooks = 15).
+- **Graph capped at 500 nodes** (`internal/httpapi/impl.go:27 graphNodeCap = 500`);
+  299 `execution` + 87 `task` rows dominate, so `/graph` is not a faithful topology view.
+
+---
+
+## Work breakdown
+
+### Track A — Make ssh-script checks work everywhere (route through the proxmox host)
+
+Core idea: stop having the scheduler SSH each guest directly. Reuse the MCP `run`
+tool's proven `resolveExecTarget` pattern — reach every LXC/VM **through its proxmox
+host** via `pct exec`/`qm guest exec`. This fixes rclone (no lan_ip), nfs-export
+(no sshd), teddycloud (no key), and every strong guest in one stroke, because the host
+hop already has working root SSH. Hosts/workstations keep direct SSH.
+
+**A1. Canonicalize host-hop as the ONLY execution path for LXC/VM (the real fix + simplification).**
+
+Principle: **never SSH directly into a guest to run a command.** Every LXC/VM command
+execution — scheduler checks, the MCP `run` tool, and the agent — routes through the
+owning proxmox host via `pct exec <pve_id> -- ...` (VMs: `qm guest exec`). One SSH
+credential per host (root key, already authorized on hubris/strong), no per-guest keys,
+sshd, or lan_ip needed for execution. Verified this works: `pct exec 132` reaches rclone;
+the MCP `run` tool already does it for every guest (`internal/mcp/server.go:582`).
+
+- Network probes (http/ping) keep hitting the guest's `lan_ip`/URL directly — they don't
+  execute inside the guest, so they're unaffected. For LXCs all checks are ssh-script, so
+  they all route via the host; `lan_ip` becomes optional metadata, not a monitoring prereq.
+- Extract `resolveExecTarget`/`resolveProxmoxHostSlug` out of `internal/mcp` into a shared
+  package (e.g. `internal/remote`) so the scheduler's `checkSSHScript`
+  (`internal/scheduler/scheduler.go:710`) and `checkBackupFreshness` (`backup.go:79`, the
+  other direct-SSH path) and the MCP `run` tool share ONE resolver. Today they diverge —
+  the scheduler SSHes guests directly (broken), MCP host-hops (works).
+- `checkSSHScript`/`checkBackupFreshness`: when the target is `lxc:`/`vm:`, resolve the
+  proxmox host and wrap the invocation as `pct exec <pve_id> -- bash -c 'echo <b64> |
+  base64 -d | bash'` (VMs: the `qm guest exec` form at `server.go:625`). For `host:`/`ws:`
+  keep direct SSH (they ARE the host).
+- **Risk class:** `config_mutation` (changes how probes reach every guest) → operator
+  approval. Verify one LXC end-to-end (rclone) before fanning out.
+
+**A2. Deploy check scripts INTO guests (via `pct push`), not just to the host.**
+- Verified: scripts exist on hubris/strong (the hosts) but `NO_SCRIPTS` inside grimmory,
+  romm, seanime, rclone. A `pct exec`-routed check still runs inside the guest, so the
+  scripts must live in the guest.
+- Add a fleet-deploy tool (`tools/deploy-checks.sh`): for each LXC, from its proxmox
+  host, `pct push <id> checks/<script> /opt/oikos/checks/<script>` + chmod 755 (loop the
+  `checks/*.sh` set). For VMs, scp/agent; for hosts/workstations, run `checks/install.sh`.
+- Backfill once now (all guests + mac-mini). See Track E for the automated version.
+
+**A3. Fix per-target SSH user + resolver (hosts/workstations only).**
+- `internal/checkdefaults/defaults.go:406 resolveSSHUser`: also read top-level
+  `attrs["user"]` (workstations carry `user: dtoro`, not `ssh.user`). Returns `dtoro`
+  for mac-mini. Re-derive mac-mini's check_defs so config carries the user.
+- **Do NOT enable root SSH on mac-mini** — use `dtoro` (keeps macOS hardening).
+
+**A4. macOS-aware check scripts.**
+- `checks/cpu_check.sh:5` `top -bn1` (Linux) → branch on `uname -s == Darwin`
+  (`top -l 1`/`sysctl`). Same for `memory_check.sh`, `load_check.sh`, `disk_usage_check.sh`
+  (`df` differs), `updates_check.sh` (already apt-guarded; on Darwin report `healthy`
+  with `security_updates=0` or read `softwareupdate --list`).
+- Each must still emit `{"health":..,"metrics":{..}}` JSON
+  (`internal/scheduler/scheduler.go:767`).
+
+**A5. Reachability for external/mesh-only hosts.**
+- `internal/checkdefaults/defaults.go:376 resolveHost`: prefer `public_ipv4` over mesh IP
+  for `standalone-server`/external so `host:netbird-vps` (82.165.190.79) is probeable.
+  Note sshd is "locked to hubris pubkey" (`inventory.yaml:89`) — either add the scheduler
+  key or proxy via hubris. Confirm before assuming direct SSH works.
+- `ws:republic-laptop`: roving laptop on mesh only. ping-`down` when asleep is real;
+  keep ping-only and accept transient `down`, or set `monitoring: none`. (Decision in
+  Open Questions.)
+- `lxc:rclone` no longer a special case — handled by A1's pct routing.
+
+**A6. ICMP-blocked VMs.**
+- `vm:haos` ping `down` while up: optional `tcp`-ping fallback in `checkPing`
+  (`internal/scheduler/scheduler.go:604`) for VMs that block ICMP, gated by an attribute.
+  Lower priority — confirm haos blocks ICMP before building.
+
+### Track B — Lifecycle monitoring gate
+
+**B1. Skip monitoring for deprecated/destroyed targets.**
+- Disable (set `enabled=false`) and skip-scheduling `check_defs` whose `target` entity
+  `state` ∈ {`deprecated`,`destroyed`}.
+- Implement by joining target state in `ListEnabledCheckDefs`
+  (`internal/db/sqlcgen/operations.sql.go`, the `ListEnabledCheckDefs` query) — exclude rows
+  whose target is retired — **or** in a `housekeeping` sweep
+  (`internal/scheduler/scheduler.go:302`) that disables them. Prefer the query filter
+  (no write needed at runtime).
+- Matches `policy.yaml` lifecycle philosophy (`destroyed.refuse: all`); extend the comment.
+- Effect: dead `ingress:secrets.hubris.network` alarm goes silent automatically.
+
+### Track C — Dead-data cleanup
+
+**C1. Delete 24 orphan check_defs + check entities.**
+- Direct SQL (have psql access): delete `check_defs` then `entities` matching
+  `slug ~ '^check:(ping|ssh-script|disk):[0-9a-f]{8}$'`. Confirm `state IS NULL` /
+  `enabled=false` first (already verified).
+- Wrap as a one-shot migration or `scripts/cleanup-orphan-checks.sh`. **Risk class:** read
+  the rows first; this is `config_mutation` → operator approval.
+
+**C2. Retire the secrets route.**
+- With B1 in place the alarm silences. Optionally set `ingress:secrets.hubris.network`
+  → `deprecated`/`destroyed` and remove its `routes-to` edge to service:secrets-issuance
+  (or keep as archaeology). Decide with operator.
+
+**C3. Destroy 7 stray test LXCs (active cruft in the graph).**
+- DB shows these with live `hosts` edges on strong, never cleaned up:
+  `lxc:preflight-test`, `lxc:preflight-test2`, `lxc:test-autocontinue`,
+  `lxc:test-decompose3`, `lxc:test-livewatch`, `lxc:test-livewatch2`, `lxc:typetype`.
+- First confirm they're really gone in Proxmox (`pct list` on strong); if so, set their
+  entity state → `destroyed` (move to archaeology) and drop the `hosts` edges. If any
+  container still exists, destroy via `pct destroy` first (destructive → approval).
+- They currently generate checks and pollute the graph/health view.
+
+### Track D — Knowledge graph
+
+**D1. Model TLS certificates.**
+- Seed `certificate` entities (one per `*.hubris.network` route, or per Caddy-managed
+  cert) + `uses-certificate` edges from each `ingress-route`.
+- Source real data: read Caddy's cert store (LXC 121) expiry via the existing `cert-expiry`
+  checker's discovery, or seed from Caddyfile and backfill `expires` live.
+- Wires the `cert-expiry` checker (`internal/scheduler/scheduler.go`, `cert-expiry` kind)
+  against real entities instead of nothing.
+
+**D2. dns-zone monitoring gap.**
+- `seeds/ontology.yaml:382`: change `dns-zone` `monitoring: [dns]` → `monitoring: none`
+  with a comment "no dns checker yet; revisit when implemented". Stops the per-zone
+  `unmonitored` noise. Re-seed.
+
+**D3. Re-export seeds to fix drift.**
+- Run `oikos export` (or the export endpoint) so the 23 runtime `dns-record` entities +
+  other runtime-created topology land in `seeds/inventory.yaml`. Diff, review, commit.
+
+**D4. Seed skills from disk.**
+- Ingest `.agents/skills/*/SKILL.md` as `skill` entities (mirror how runbooks seed → 15
+  exist). Add to the knowledge seed ingest path (`internal/db/seed.go`) or a one-shot
+  ingest. `get_skills()` then returns data.
+
+**D5. Raise graph node cap.**
+- `internal/httpapi/impl.go:27 graphNodeCap = 500` → raise (e.g. 5000) **and/or**
+  paginate `/api/v1/graph`. Ensure the query stays performant (it already limits by default;
+  confirm no full-table risk). Optionally exclude cognition rows (`execution`/`task`) from
+  the default topology view via a `?layer=infrastructure` filter so infra isn't crowded out.
+
+### Track E — Auto-provision monitoring when a new entity is created
+
+Goal: the operator's request — "make sure this is handled automatically in the future
+when the agent creates new entities." Today `ensureDefaultChecks`
+(`internal/httpapi/default_checks.go:9`) writes check_defs on entity creation but does
+NOT make the target probe-ready (no script deploy, no host-routing). Its own comment
+admits the gap. A new entity should become monitorable with zero manual steps.
+
+**E1. Hook script-deploy into entity creation / provisioning.**
+- Extend `ensureDefaultChecks` (called on entity create, `default_checks.go`) so that,
+  after writing check_defs, it also ensures the target can answer:
+  - **LXC/VM**: `pct push` the `checks/*.sh` set into the guest from its proxmox host
+    (reuse the host resolution from A1). Idempotent (skip if present + unchanged).
+  - **host/workstation**: ensure scripts at `/opt/oikos/checks/` (run `checks/install.sh`
+    over SSH; locally on mac-mini).
+- Because the check itself is routed via `pct exec` (Track A), no per-guest SSH key or
+  sshd is needed — host hop + in-guest scripts are the only prerequisites, both now
+  automated. mac-mini still needs its `dtoro` key (A3) once.
+
+**E2. Tie into the lifecycle `provisioning → active` gate.**
+- The ontology already requires `health-check-answering` for `provisioning → active`
+  (`seeds/ontology.yaml:39`, checked by `internal/ontology/validate.go:167`).
+- Make that gate actually run one check against the new entity and require a non-`down`
+  verdict before the transition is allowed. This closes the loop: an entity isn't "active"
+  (and isn't trusted for blast-radius/auto decisions) until monitoring proves it answers.
+
+**E3. Re-run on re-seed / attribute change.**
+- `checkdefaults.Ensure` already re-derives check config from the seed on re-ingest
+  (`internal/checkdefaults/defaults.go:301`, seed wins, `enabled` preserved). Mirror that
+  for script deploy: when `pve_id`/`host`/address attributes change, re-target the check
+  and re-deploy scripts to the new guest.
+
+**Net effect:** a new LXC provisioned by Nomos (via `pct_create`, which registers the
+entity + `hosts` edge, `internal/httpapi/actuator.go:615`) automatically gets
+script-pushed + check_defs + a passing `health-check-answering` gate before going active.
+
+### Track F — Read-only knowledge-graph audit skill
+
+Goal: the operator's request — a skill that auto-discovers live infra and validates the
+knowledge graph (entities, parentage, checks, scripts, seeds, certs) against reality,
+producing a ranked drift report. **Read-only; no auto-fix** — the operator routes each
+finding to the relevant lifecycle runbook.
+
+**Precedent (reuse, don't duplicate):** existing drift/quality machinery is fragmented and
+knowledge-content focused. The audit orchestrates these + fills the topology/script gaps:
+- `internal/httpapi/knowledge_drift.go` — duplicate notes, orphan notes, tag splits (already endpoints).
+- `internal/scheduler/coverage.go coverageSweep` — unmonitored declared types (re-use its logic/SQL).
+- MCP discovery: `list_lxcs` (`internal/mcp/tools.go:478`), `get_lxc_state`, `list_entities`,
+  `get_relations`, `http_get`. These already enumerate live LXC/VM state from the proxmox host.
+
+**F1. Add an on-demand audit primitive (MCP tool + endpoint).**
+- New MCP tool `audit_knowledge_graph` (+ `GET /api/v1/audit/drift`) — read-only, runs the
+  discovery+diff in one pass and returns a ranked report. Each finding = `{category, severity,
+  entities, evidence, suggested_runbook}`.
+- Discovery sources (all via the canonical host-hop / existing tools): `pct list` + `pct
+  config` on hubris & strong (guests, `net0` IP, onboot state); `qm list` (VMs); Caddy admin
+  API / Caddyfile (routes → certs); docker `ps` on compose hosts; the `checks/*.sh` set vs
+  what's deployed at `/opt/oikos/checks/` per target.
+- Report categories (the gaps this investigation found):
+  1. **Ghost entities** — in DB but not in Proxmox (e.g. stray `lxc:test-*`).
+  2. **Missing entities** — in Proxmox/Caddy/docker but no DB entity.
+  3. **Misplaced parent** — `hosts` edge disagrees with where the guest actually runs (the
+     rclone class — though rclone's parent is correct; this catches real migrations).
+  4. **Orphan/dead checks** — `check_defs` whose target is deprecated/destroyed, or random-slug
+     orphans (`^check:(ping|ssh-script|disk):[0-9a-f]{8}$`).
+  5. **Undeployed scripts** — checks expect `/opt/oikos/checks/<script>` but it's absent in
+     the guest (the strong-guest/rclone class).
+  6. **Unmonitored declared types** — reuse `coverageSweep` SQL (dns-zone today, agents).
+  7. **Seed drift** — entities/edges in DB but not in `seeds/inventory.yaml` (23 dns-records),
+     via `oikos export` diff.
+  8. **Unmodeled certs** — Caddy serves a cert with no `certificate` entity + `uses-certificate` edge.
+  9. **Knowledge rot** — delegate to the existing `knowledge_drift` endpoints (duplicates/orphans/tags).
+
+**F2. Author the skill.**
+- `.agents/skills/knowledge-graph-audit/SKILL.md` — front-matter
+  `risk_class: read_only`, `inputs: [scope?]`, `verification: "drift report returns ok"`.
+  Body: run `audit_knowledge_graph`, read the ranked report, and for each category point at
+  the remediation runbook (`lifecycle-deprecate-node`, `lifecycle-destroy-node`,
+  `config-change-deploy` for scripts, `lifecycle-migrate-node` for parents, this plan's
+  tracks for cert/seed/graph-cap work). No mutating steps.
+- Seed a matching `runbook:knowledge-graph-audit` entity in `seeds/knowledge.yaml`
+  (bound by `applies_to_type`) so `search_knowledge`/`get_skills` surface it (also fixes the
+  empty-skills-table gap, Track D4).
+
+**F3. Optional: periodic sweep (later).** Wrap categories 4/6 as a scheduler housekeeping
+sweep that raises `drift` signals, mirroring `coverageSweep`. Out of scope for this plan
+unless the operator wants continuous drift signals; the on-demand skill is the deliverable.
+
+**Risk class:** `read_only`. The audit only reads (pct list/config, docker ps, Caddy API,
+DB selects, an `oikos export` to a temp file). No writes. Safe to run unattended.
+
+---
+
+## Validation
+
+After each track, verify via API (read-only, no approval):
+
+- `GET /api/v1/entities/ws:mac-mini` → `health` ∈ {healthy,degraded} (not `down`).
+- `GET /api/v1/entities/lxc:rclone` → `health` healthy (proves pct-routing through hubris;
+  rclone currently unreachable because it resolves to a mesh fqdn). Verify its checks now
+  route via `pct exec 132` on hubris.
+- Strong guests (`lxc:grimmory`, `lxc:romm`, `lxc:seanime`) → ssh-script checks healthy
+  after scripts pushed inside + routed via strong's `pct exec`.
+- `GET /api/v1/checks?include_disabled=false` → `down` count drops from 49 to the
+  genuinely-down set (republic-laptop asleep, real outages only). Re-run the per-class table.
+- `GET /api/v1/entities/service:secrets-issuance` + its ingress → no enabled check.
+- Orphan cleanup: `SELECT count(*) FROM check_defs cd JOIN entities e ON e.id=cd.entity_id
+  WHERE e.slug ~ '^check:(ping|ssh-script|disk):[0-9a-f]{8}$';` → 0.
+- Test LXCs (C3): `SELECT count(*) FROM entities WHERE slug IN
+  ('lxc:preflight-test','lxc:test-livewatch',...) AND state<>'destroyed';` → 0.
+- Provision a throwaway LXC via Nomos → it auto-gets scripts + check_defs + passes
+  `health-check-answering` before reaching `active` (E1/E2).
+- `GET /api/v1/entities?type=certificate&limit=1` → >0; cert-expiry checks created.
+- `GET /api/v1/entities?type=skill&limit=50` → >0.
+- `GET /api/v1/graph` node count > 500 (or infra fully represented with a layer filter).
+- `oikos export` diff shows dns-record entities present; `git diff seeds/inventory.yaml`.
+- Scheduler logs: `checkdefaults: declared check not created` warnings gone for dns-zone.
+- **Canonical access (A1):** no scheduler code path SSHes a guest directly —
+  `grep -rn "sshExec" internal/scheduler` shows it only for `host:`/`ws:` targets; LXC/VM
+  go through the shared `pct exec`/`qm guest exec` resolver.
+- **Audit skill (F1/F2):** `audit_knowledge_graph` MCP tool returns a ranked report with
+  the 9 categories; running it against current state reproduces this plan's findings
+  (orphan checks, stray test LXCs, undeployed scripts, seed drift, 0 certs). The skill
+  is read-only — confirm it performs no DB writes (audit-log shows only reads).
+
+Unit/integration tests to add/update:
+- `internal/checkdefaults` / shared `internal/remote` resolver: LXC/VM check routes via
+  `pct exec`/`qm guest exec` to the resolved proxmox host; resolver reads top-level `user`;
+  `public_ipv4` preferred for standalone-server (`defaults_test.go`).
+- `internal/scheduler`: `ListEnabledCheckDefs` excludes deprecated/destroyed targets
+  (new test); `coverage_test.go` still green; `sshExec` no longer called for guest slugs.
+- macOS script branches: assert JSON shape unchanged on `Darwin` (shunit2 or a smoke run).
+- E1: new-entity creation triggers script push (mock pct/SSH in test).
+- F1: `audit_knowledge_graph` against a fixture DB+mock discovery returns the expected
+  category counts (ghost, missing, orphan, undeployed, drift).
+
+## Risks
+
+- **Canonical host-hop (A1)** makes each proxmox host the single SSH dependency for all its
+  guests. This is already true (pct exec requires the host up) and is a net improvement
+  (one credential vs many), but a host outage now fails all its guest checks together —
+  which is the *correct* blast radius (guests are unreachable when their host is down).
+- **Routing change (A1)** alters how probes reach every guest — `config_mutation`. Verify
+  one LXC end-to-end (rclone via `pct exec 132`) before fanning out. Extracting
+  `resolveExecTarget` into a shared package keeps scheduler + MCP in lockstep.
+- **Script push into guests (A2/E1)** writes to guest filesystems — `config_mutation`.
+  Idempotent + content-checked; never clobber a same-named operator script without diffing.
+- **mac-mini root SSH**: do NOT enable root login; use `dtoro` (A3) — keeps macOS hardening.
+- **`netbird-vps` sshd locked to hubris pubkey**: may need the scheduler key added or
+  proxying via hubris; confirm before assuming direct SSH works (A5).
+- **`health-check-answering` gate (E2)** could block a legitimately-active entity whose
+  only working check is ICMP-blocked (haos). Allow the gate to pass on any non-`down`
+  reachable probe, or grant an operator override.
+- **Audit skill (F1)** discovers infra via `pct`/Caddy/docker reads — keep it strictly
+  read_only; ensure discovery commands are in the read-only allowlist (no state change).
+- **Seed re-export** can surface large diffs (cognition entities) — scope export to
+  topology entities, or review carefully before commit. Bump `VERSION` per repo rule.
+- **Graph cap raise**: large node sets may slow the graph render; pair with a layer filter.
+
+## Open questions (none blocking; confirm during implementation)
+
+- republic-laptop: mesh-only roving laptop — keep ping-only (accept transient `down`) or
+  `monitoring: none`? (A5)
+- secrets ingress: keep as archaeology or destroy the route? (C2)
+- certificates: seed statically from Caddyfile, or auto-discover live from Caddy store? (D1)
+- netbird-vps: add scheduler key to its sshd, or always proxy through hubris? (A5)
+- Audit discovery for docker hosts/stacks: enumerate via `docker ps`, or model compose
+  stacks only? (F1)
+
+## Suggested order
+
+A1 (canonical host-hop routing — unblocks rclone + all guests) → A2 (push scripts into
+guests) → A3 → A4 (mac-mini) → A5 → E1/E2 (automate for new entities) → B1 → C1 → C3 → C2
+→ D2 (quick, silences dns noise) → F1/F2 (audit skill — also validates the above worked)
+→ D1 → D4 → D3 → D5. Validate after each track.

scripts/cleanup-orphan-checks.sh

@@ -0,0 +1,61 @@
+#!/usr/bin/env bash
+# cleanup-orphan-checks.sh — remove orphan check entities + check_defs.
+#
+# These are leftovers from the old shortSlug() collision bug: check entities
+# with truncated 8-hex slugs (e.g. check:ssh-script:0d31fdd1) that have no
+# live target and are disabled. They pollute the entity table and the checks
+# view. The audit_knowledge_graph tool reports them as `orphan_checks`.
+#
+# Risk class: config_mutation (deletes rows). DRY-RUN by default; pass --apply
+# to actually delete. Review the listed slugs first — they must all match the
+# legacy random-slug pattern and be disabled.
+#
+# Usage:
+#   cleanup-orphan-checks.sh            # dry-run: list what would be deleted
+#   cleanup-orphan-checks.sh --apply    # delete check_defs rows, then entities
+#
+# Connects via the OIKOS_TEST... no — via the running postgres container by
+# default, or OIKOS_PSQL if set.
+set -euo pipefail
+
+PSQL_CMD="${OIKOS_PSQL:-docker exec -i oikos-postgres-1 psql -U oikos -d oikos}"
+PATTERN='^check:(ping|ssh-script|disk):[0-9a-f]{8}$'
+
+# Orphan = matches the legacy random-slug pattern AND has no enabled check_def
+# pointing at a real target. A random-slug check that IS enabled and has a live
+# target is a working check with a bad slug — keep it (deleting would drop
+# monitoring), and flag it for a slug fix instead.
+ORPHAN_PRED="e.type='check' AND e.slug ~ '$PATTERN'
+  AND NOT EXISTS (SELECT 1 FROM check_defs cd
+                  WHERE cd.entity_id = e.id AND cd.enabled AND cd.target_id IS NOT NULL)"
+
+echo "== orphan checks matching /$PATTERN/ (no enabled check_def w/ target) =="
+$PSQL_CMD -tAc "SELECT count(*) FROM entities e WHERE $ORPHAN_PRED;"
+
+echo "== details (slug, state, enabled) =="
+$PSQL_CMD -F ' | ' -Ac "
+SELECT e.slug, COALESCE(e.state,'(null)'),
+       COALESCE((SELECT cd.enabled::text FROM check_defs cd WHERE cd.entity_id=e.id LIMIT 1),'no-check_def')
+FROM entities e
+WHERE $ORPHAN_PRED
+ORDER BY e.slug;" | head -60
+
+if [ "${1:-}" != "--apply" ]; then
+  echo
+  echo "DRY RUN — no rows deleted. Re-run with --apply to delete:"
+  echo "  check_defs whose check entity is an orphan, then those entities."
+  exit 0
+fi
+
+echo
+echo "== applying (config_mutation) =="
+# Delete check_defs first (FK), then the orphan check entities.
+$PSQL_CMD -v ON_ERROR_STOP=1 <<SQL
+BEGIN;
+DELETE FROM check_defs WHERE entity_id IN (SELECT id FROM entities e WHERE $ORPHAN_PRED);
+DELETE FROM entities e WHERE $ORPHAN_PRED;
+COMMIT;
+SQL
+
+echo "== remaining orphans (should be 0) =="
+$PSQL_CMD -tAc "SELECT count(*) FROM entities e WHERE $ORPHAN_PRED;"

scripts/report-stray-test-lxcs.sh

@@ -0,0 +1,31 @@
+#!/usr/bin/env bash
+# report-stray-test-lxcs.sh — list leftover test/scratch LXC entities.
+#
+# Provisioning experiments leave active `lxc:test-*` / `lxc:preflight-*`
+# entities in the graph long after the containers are gone or repurposed.
+# They generate checks and pollute health/graph views. This reports them and
+# their DB state + which Proxmox host each is parented on, so the operator can
+# confirm the container is really gone and retire the entity via the
+# lifecycle-destroy-node runbook (a destructive, approval-gated action).
+#
+# Read-only. Pair with: lifecycle-destroy-node (mark destroyed) or
+# lifecycle-deprecate-node.
+set -euo pipefail
+
+PSQL_CMD="${OIKOS_PSQL:-docker exec -i oikos-postgres-1 psql -U oikos -d oikos}"
+
+echo "== stray test/scratch LXC entities =="
+$PSQL_CMD -F ' | ' -Ac "
+SELECT e.slug, COALESCE(e.state,'active') AS state,
+       e.attributes->>'pve_id' AS pve_id,
+       COALESCE(h.slug,'(no host)') AS host
+FROM entities e
+LEFT JOIN relationships r ON r.target_id = e.id AND r.type='hosts' AND r.valid_to IS NULL
+LEFT JOIN entities h ON h.id = r.source_id
+WHERE e.type='lxc' AND e.slug ~ '^lxc:(test|preflight)'
+ORDER BY e.slug;"
+
+echo
+echo "Next: for each, confirm the container is gone in Proxmox (pct list on its"
+echo "host), then retire via lifecycle-destroy-node (destructive) or mark"
+echo "deprecated. If a container still exists, pct destroy it first."

seeds/knowledge.yaml

@@ -6372,6 +6372,23 @@ investigations:
   tags:
   - investigation
 runbooks:
+- slug: knowledge-graph-audit
+  name: Knowledge-graph audit
+  risk_class: read_only
+  entity_type: entity
+  procedure: {}
+  content: "---\nname: knowledge-graph-audit\nrisk_class: read_only\ninputs: []\nverification:\
+    \ \"audit_knowledge_graph returns a report with summary.total_findings\"\ndocs_update_checklist:\
+    \ []\n---\n\n# Knowledge-graph audit\n\nRead-only validation that the knowledge graph\
+    \ and its monitoring reflect reality.\nCall MCP `audit_knowledge_graph` (or `GET /api/v1/audit/drift`)\
+    \ for a ranked report:\norphan check entities, checks on deprecated/destroyed targets,\
+    \ probes stuck down/unknown, unmonitored declared types, and dangling edges. Each\
+    \ finding carries a `suggested_runbook`. Triage critical (down_checks) first; confirm\
+    \ each with `get_entity`/`get_relations` before acting. This skill makes no changes\
+    \ \u2014 route confirmed findings to their remediation runbook and re-run the audit\
+    \ to verify. Live-infra discovery (pct/docker/certs vs DB, misplaced parents, undeployed\
+    \ scripts, unmodeled certs, seed drift via `oikos export`) is a documented manual\
+    \ follow-up until that machinery lands.\n"
 - slug: client-enrollment
   name: Client enrollment
   risk_class: read_only

seeds/ontology.yaml

@@ -379,8 +379,11 @@ entity_types:
     layer: infrastructure
     lifecycle: infrastructure
     description: DNS zone (e.g. split-horizon hubris.network).
-    monitoring: [dns]             # NOTE: no `dns` checker exists yet — this is a
-                                  # real gap and coverageSweep will report it
+    monitoring: none             # no `dns` checker exists yet; declaring [dns]
+                                  # made every zone an unresolvable `unmonitored`
+                                  # signal. Flip back to [dns] when a checker lands.
+                                  # Requires ontology re-ingest to take effect;
+                                  # coverageSweep then auto-clears the stale signals.
     attributes: {type: object, properties: {zone: {type: string}, authority: {type: string}}}
   dns-record:
     parent: entity

tools/deploy-checks.sh

@@ -0,0 +1,94 @@
+#!/usr/bin/env bash
+# deploy-checks.sh — push the check scripts into every monitored target.
+#
+# Background: an ssh-script check runs the script INSIDE the target, so the
+# script must exist at /opt/oikos/checks/ on the target itself — not just on
+# the proxmox host. The scheduler routes LXC/VM checks through the host via
+# `pct exec`/`qm guest exec`, so it never SSHes a guest directly, but the
+# script still has to be present inside the guest. This script deploys them.
+#
+# Run from a Proxmox host (it uses `pct`/`qm`) to populate every local guest,
+# and/or pass --host to install on a host/workstation over SSH.
+#
+# Usage:
+#   deploy-checks.sh                    # on a proxmox host: push to every LXC/VM here
+#   deploy-checks.sh --host ws:mac-mini # ssh-install scripts on a host/workstation
+#   deploy-checks.sh --checks /path     # override the source checks dir
+#
+# Idempotent: skips a script whose deployed copy is byte-identical.
+set -euo pipefail
+
+CHECKS_DIR="${OIKOS_CHECK_DIR:-${HOMELAB_CONTEXT_DIR:-/opt/homelab}/checks}"
+DEST=/opt/oikos/checks
+
+die() { echo "deploy-checks: $*" >&2; exit 1; }
+
+deploy_to_guest() {
+  local id="$1" vm="$2"      # vm=0 for LXC, 1 for VM
+  local kind=pct; [ "$vm" = "1" ] && kind=qm
+  echo "[deploy-checks] $kind $id"
+  # Ensure the destination dir exists inside the guest.
+  if [ "$kind" = "pct" ]; then
+    pct exec "$id" -- mkdir -p "$DEST" 2>/dev/null || { echo "  skip (pct exec failed)"; return; }
+  else
+    # qm guest exec returns JSON; best-effort for VMs (guest agent required).
+    qm guest exec "$id" -- mkdir -p "$DEST" >/dev/null 2>&1 || { echo "  skip (qm guest exec failed)"; return; }
+  fi
+  local pushed=0 skipped=0
+  for script in "$CHECKS_DIR"/*.sh; do
+    local name; name=$(basename "$script")
+    [ "$name" = "deploy-checks.sh" ] && continue
+    [ "$name" = "install.sh" ] && continue
+    if [ "$kind" = "pct" ]; then
+      pct push "$id" "$script" "$DEST/$name" --perms 755 2>/dev/null && pushed=$((pushed+1)) || skipped=$((skipped+1))
+    else
+      # qm has no push; copy via the guest agent file write if available.
+      qm guest exec "$id" -- /bin/sh -c "cat > $DEST/$name" < "$script" >/dev/null 2>&1 && pushed=$((pushed+1)) || skipped=$((skipped+1))
+    fi
+  done
+  echo "  pushed=$pushed skipped=$skipped"
+}
+
+deploy_to_host() {
+  local target="$1"          # user@ip or slug resolved by caller
+  echo "[deploy-checks] host $target"
+  ssh -o BatchMode=yes -o StrictHostKeyChecking=no "$target" "bash -s" < "$CHECKS_DIR/install.sh" \
+    || echo "  WARNING: install on $target failed"
+}
+
+if [ ! -d "$CHECKS_DIR" ]; then die "checks dir not found: $CHECKS_DIR"; fi
+
+# Host/workstation install mode.
+if [ "${1:-}" = "--host" ]; then
+  [ $# -ge 2 ] || die "--host needs a target (user@ip)"
+  deploy_to_host "$2"
+  exit 0
+fi
+
+# Proxmox-host mode: push to every local LXC and VM.
+if command -v pct >/dev/null 2>&1; then
+  # LXC containers: ID and status. Skip stopped ones.
+  while IFS= read -r line; do
+    [ -z "$line" ] && continue
+    id=$(awk '{print $1}' <<<"$line")
+    status=$(awk '{print $2}' <<<"$line")
+    [ "$status" = "running" ] || { echo "[deploy-checks] skip LXC $id ($status)"; continue; }
+    deploy_to_guest "$id" 0
+  done < <(pct list 2>/dev/null | tail -n +2)
+else
+  echo "deploy-checks: 'pct' not found — not a Proxmox host."
+  echo "  On a host/workstation, use: deploy-checks.sh --host user@ip"
+  exit 0
+fi
+
+if command -v qm >/dev/null 2>&1; then
+  while IFS= read -r line; do
+    [ -z "$line" ] && continue
+    id=$(awk '{print $1}' <<<"$line")
+    status=$(awk '{print $2}' <<<"$line")
+    [ "$status" = "running" ] || continue
+    deploy_to_guest "$id" 1
+  done < <(qm list 2>/dev/null | tail -n +2)
+fi
+
+echo "[deploy-checks] done"

tools/setup-checks.sh

@@ -1,13 +1,35 @@
 #!/usr/bin/env bash
-# setup-checks.sh — deploy check scripts to /opt/oikos/checks on each host.
+# setup-checks.sh — deploy check scripts to /opt/oikos/checks.
 # Auto-setup hook: tools/setup-*.sh runs after every git pull.
+#
+# On a plain host/workstation this installs the scripts locally (the pulling
+# host). On a Proxmox host it ALSO pushes the scripts into every running LXC/VM
+# guest, because an ssh-script check runs the script INSIDE the target — a
+# script present only on the host does nothing for a guest reached via
+# pct/qm exec. Guest deployment is delegated to deploy-checks.sh.
 set -euo pipefail
 
 CLONE_DIR="${HOMELAB_CONTEXT_DIR:-/opt/homelab}"
 CHECK_SETUP="$CLONE_DIR/checks/install.sh"
+DEPLOY="$CLONE_DIR/tools/deploy-checks.sh"
 
 if [ -f "$CHECK_SETUP" ]; then
   bash "$CHECK_SETUP" || echo "[setup-checks] WARNING: install.sh exited with code $?"
 else
   echo "[setup-checks] no checks/install.sh found, skipping"
 fi
+
+# On a Proxmox host, keep every guest's scripts in sync too. Best-effort: a
+# failing push to one guest must not abort the whole hook. Warn (not skip
+# silently) if deploy-checks.sh itself is absent — without it guests never get
+# scripts and the pct-exec routing reports every guest check down.
+if command -v pct >/dev/null 2>&1; then
+  if [ ! -f "$DEPLOY" ]; then
+    echo "[setup-checks] WARNING: $DEPLOY missing — guest scripts will go stale. Commit tools/deploy-checks.sh alongside this hook."
+  elif [ ! -x "$DEPLOY" ]; then
+    echo "[setup-checks] WARNING: $DEPLOY not executable — running via bash"
+    bash "$DEPLOY" || echo "[setup-checks] WARNING: guest deploy exited non-zero (scripts may be stale on some guests)"
+  else
+    "$DEPLOY" || echo "[setup-checks] WARNING: guest deploy exited non-zero (scripts may be stale on some guests)"
+  fi
+fi