Documentation and repo-hygiene pass following the client/server split:
Plan drift (audited all other active plans against current code):
- oikos-gaps-and-improvements.md: mark Section C and D.5 resolved (both
described cmd/hermes, renamed to cmd/nomos with a real LLM loop since);
refresh ~10 stale file:line citations; fix tool-count (33, not 28).
- liveness-drift-and-ux-cohesion.md: fix stale default-model claim (now
deepseek-v4-pro since 2026-07-10) and "not yet deployed" status.
- nomos-agent-code-review.md: fix C1's citation (one unauthenticated route
to nomos now, not two, after the client/server split).
- wails-desktop-app.md: record the production deploy outcome.
Repo structure: added missing directories to README/CONTRIBUTING layout
tables (checks/, tools/, cmd/webhook/, docs/operations/), fixed a broken
link, added ADR 0015 documenting the auth/CORS/client-split model (there
wasn't one despite CONTRIBUTING's own process requiring it), normalized
ADR 0013/0014's format drift, added an Authentication section to
AGENTS.md/CLIENTS.md (every example call was missing the now-required
bearer header).
Retired the Goose+Nomos workstation flow (bootstrap.sh --with-nomos,
tools/setup-nomos-soul.sh, .agents/operations/nomos-agent.md) and the
Caveman auto-install tooling (tools/setup-caveman.sh, tools/caveman/) —
both superseded by the production containerized Nomos agent, which has
never used either. Kept .agents/shared/caveman.md itself (the terse
writing-style convention agents still follow by reading it).
Deleted the orphaned legacy Python oikos/ directory — nothing imports it,
and bin/homelab (the CLI it was kept for) no longer exists in the repo.
Rewrote .agents/operations/agent-enrollment.md (365 -> ~110 lines) and
commands.md to match the current architecture instead of the retired
`homelab` CLI; migrated the still-true networking prerequisites (Netbird,
split-horizon DNS, SSH key distribution) into the knowledge base as a
runbook via upsert_knowledge rather than duplicating them in markdown.
Updated all 10 .agents/skills/ runbooks referencing the dead CLI with
their real MCP tool / REST API equivalents, or flagged them as needing
verification where no equivalent is confirmed yet.
Two real bugs found and fixed, not just docs:
- The tools/setup-*.sh auto-setup glob was tools/*.setup.sh in THREE
places (tools/post-pull.sh, bootstrap.sh, and internal/httpapi/impl.go's
GetClientContext handler) since the mechanism's introduction on
2026-06-02 — never matched any real filename, so no client has ever
picked up an auto-setup script via git-pull or the context-poller sync.
Fixed all three; the Go server-side fix is the one that actually matters
since it's what the current context-poller mechanism depends on.
- bootstrap.sh removed dead vestigial --gitea-token/--gitea-user flags
(parsed, never consumed) left over from an earlier clone-based model.
Also flagged, not fixed (documented as an open gap in
client-enrollment/SKILL.md): bootstrap.sh tells a freshly-enrolled client
to call POST /api/v1/clients/{slug}/activate to finish enrollment, but
that route doesn't exist in api/openapi.yaml — EnrollClient sets entities
to provisioning and nothing currently transitions them to active.
Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Problem: docs-lint (added in the wiki-hq reorg) surfaced 126 broken relative
links that predated this session — a container rename, incident/plan docs
that moved into archive/done subfolders without their inbound links being
updated, and a handful of relative-depth bugs in files nested under
containers/archive/ and plans/done/.
Fixes applied, by category:
- 124-authentik.md -> 106-auth-outpost.md (container was renamed; ~40 refs).
- investigations/{2026-04-21-hubris-crash-loop,2026-05-31-authentik-vps-migration}.md
-> archive/ prefix (both moved to investigations/archive/ previously).
- plans/{2026-06-01-slate-ax-to-sodola-migration,2026-06-04_130000-deprecate-claudio-bot,
2026-06-25-yuvomi-deployment}.md -> plans/done/ prefix.
- Depth bugs in files nested one level deeper than their siblings assumed
(investigations/archive/*, knowledge/wiki/containers/archive/*,
plans/done/*) — corrected relative-path depth.
- Destroyed containers with no surviving page (126-plato) delinked to the
containers/index.md archaeology row instead of a 404.
- ludo-mini.yaml -> strong.yaml (host was renamed, same physical machine).
- netbird-vps.md (no narrative page exists) -> netbird-vps.yaml (substrate
record, matching the existing convention for hosts without a wiki page).
- runbook-dpkg-interrupted.md refs -> .agents/skills/runbook-dpkg-interrupted/SKILL.md
(missed in the phase-4 runbook move because the referencing files used a
bare filename, not a runbooks/ prefix).
- One dangling forward-reference to a never-written investigation delinked
to the actual incident record it was describing.
Left alone: two links in knowledge/wiki/containers/101-jellyfin.md into
devops/homelab-authentik-admin/ — an intentional reference to a sibling repo,
not present in this checkout.
Verification: broken-link count 126 -> 2 (real remainder is the cross-repo
reference above); gen-topology.py --check still exit 0; build_host_files.py
still idempotent; all inventory.yaml doc_page targets still resolve.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Problem: runbooks are agent-executable procedures but lived at the repo root,
separate from the other agent instruction now under .agents/.
Change:
- Move runbooks/<name>.md -> .agents/skills/<name>/SKILL.md (folder per skill,
matching the wiki-hq skills layout). Frontmatter (name, risk_class, inputs,
verification, docs_update_checklist, transition) preserved.
- Rewrite links (inbound from plans; between-skill siblings) via the move map.
- Update prose references in AGENTS.md, HERMES.md, .agents/OIKOS.md, and the
operations schema; fix a pre-existing stale link to operations/commands.md.
No code consumed runbooks/ by path, so nothing else changes.
Verification: all SKILL.md frontmatter parses with valid risk_class; every
lifecycle transition resolves to an oikos/ontology.yaml state; broken-link
count 127 -> 126 (fixed one, introduced none).
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
