- Wire secretsManager in NewHandler() — instantiate InfisicalBackend
when OIKOS_INFISICAL_SITE_URL is set (previously always nil)
- Add get_secret, list_secrets, set_secret MCP tools with nil-backend
graceful degradation
- Add oikos secret get|set|list CLI subcommands for Infisical
- Fix Set() bug: create-before-update so new keys are created;
add Type: "shared" to Update so it finds the right secret;
disable SDK cache so Get returns fresh data after Set
- Clean enrollment response: remove fake infisical_client_id/
infisical_client_secret stubs, store age key in Infisical for real
Adds audit_knowledge_graph (MCP tool) and GET /api/v1/audit/drift (endpoint)
backed by a shared internal/audit package. One pass surfaces the structural
gaps an operator otherwise finds by accident: orphan check entities, checks
targeting deprecated/destroyed entities, probes stuck down/unknown, unmonitored
declared types, and live edges pointing at destroyed targets. Each finding
carries a suggested remediation runbook. Read-only and safe to run unattended.
Ships the knowledge-graph-audit skill (SKILL.md + seeded runbook) that
interprets the report and routes findings to the lifecycle runbooks.
Monitoring coverage was 3 of 89 active entities. Three bugs, each hidden by
discarded errors in checkdefaults:
- writeCheck generated a fresh uuid, inserted the check entity ON CONFLICT
(slug) DO NOTHING, then wrote a check_defs row referencing it. On any
re-seed the slug already existed, the entity insert no-oped, and the FK
violated — aborting the ingest transaction and surfacing as an unrelated
failure several entities later. Re-seeding has been broken since; prod's
coverage was frozen at its first successful seed. This is what
TestSeedIngestIdempotentAndNoDuplicateEdges had been reporting.
- shortSlug truncated to the last 8 chars, so all 21 ingress routes collapsed
to ".network" and overwrote each other; service:jellyfin collided with
lxc:jellyfin.
- The ssh-script checker never read the `args` config checkdefaults wrote, so
process_check.sh always ran without its unit name and returned "unknown".
Coverage is now 75/89. Monitoring is declared per entity type in
seeds/ontology.yaml and resolved through the is-a hierarchy, so a type can say
it warrants nothing (site, lan, mesh, cluster) and never be reported as a gap.
coverageSweep raises an `unmonitored` signal only where a type declares
monitoring it lacks — 8 real gaps, no false positives.
Also:
- entity_types.attribute_schema was never ingested: the seed loader read
"attribute_schema" but the YAML says "attributes", so all 60 types stored
JSON null.
- ListExecutions ignored its declared target/action/correlation_id filters and
paginated on a non-unique target slug, dropping and repeating rows.
- started_at was captured but only written at terminal state, so a running
execution reported NULL for its whole life. The three MCP auto-run copies
wrote no timing at all; they are now one autoRun helper.
- SSH output was buffered to completion and discarded entirely on timeout.
Both sshExec copies now stream through a shared execlog sink into
execution_logs, and keep partial output when a command is cancelled.
- executions.correlation_id was a random per-execution uuid that correlated
nothing; it is now the chat session id, which is what lets the chat tail
live output.
- reversible_low had no auto-run branch despite policy declaring it
unattended. Since computeCommandRisk never returns it, the class only arises
when an agent declares it over a read_only command — so gating it penalised
candor without adding safety.
- backup-target gains a backup-freshness checker (portable find -mmin, since
the first target is on macOS), resolving its host by walking backs-up-to
backwards. The pre-deploy pg_dump is now a tracked backup target.
UI: an Executions section on entity detail with live output tailing, and
streamed output under a running `run` call in the chat timeline.
Migrations 022-024. Ops.svelte and context.ts exclude execution.output from
their refetch triggers, which would otherwise fire once a second per command.
Co-Authored-By: Claude <noreply@anthropic.com>
The Knowledge page was read-only from the HTTP API — the only writer was
the agent's MCP upsert_knowledge tool. Adds create/update/soft-delete/
restore/trash endpoints, a DB-trigger-backed revision history (catches
both the web UI and the MCP tool), and maintenance endpoints: duplicate
detection (pg_trgm + complete-linkage clustering), tag rename/normalize,
orphan detection, and merge.
Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
10 routes are registered manually on the chi router in server.go rather
than generated from openapi.yaml. Added a 'Non-OpenAPI routes' comment
block at the top of NewHandler listing each route with its structural
reason for the carve-out:
- Auth/infra: /healthz, /api/v1/auth/oidc-*, /oidc-callback — bypass
auth middleware or aren't JSON API
- SSE override: /api/v1/events/stream — re-registered for Flush()
- Ad-hoc aggregations: /knowledge/recent, /knowledge/content/{id},
/activity/recent, /activity/session/{id}, /learning/timeline,
/learning/trend — derived shapes with no schema type yet
Updated .agents/dev/CONTRIBUTING.md §OpenAPI codegen with the carve-out
policy: if an ad-hoc route stabilizes, promote it to openapi.yaml with a
proper schema and migrate the serve* function to a strict handler.
- Server: /oidc-callback HTML page exchanges Authentik code for token,
displays it for user to copy into the desktop app's Token tab
- oidc.ts: desktop mode uses apiUrl+/oidc-callback as redirect URI,
encodes PKCE verifier in state parameter
- Config.svelte: add Server URL field to OIDC tab for desktop UX
- Caddy: add /oidc-callback to enroll bypass (no Authentik gate)
- App: favicon.png as system tray icon, window title 'Oikos'
- web/index.html: title 'Oikos'
Two fixes to the new category taxonomy:
- Knowledge Base couldn't show a document/investigation/runbook's own
markdown body — knowledge_entities.content was never exposed by any
endpoint (GetEntityKnowledge answers "what knowledge references this
entity", not "what is this entity's content"). Add GET
/api/v1/knowledge/content/{id} and render it with the existing
marked+DOMPurify pipeline in a new Content section.
- The graph hid any edge whose other endpoint wasn't in the active
category, so nodes with only cross-category neighbors rendered as
disconnected dots. Queried the real relationship table: ~70% of infra
edges cross Fleet/Network/Services/Storage lines (compute+network+
software+storage+physical used to be one "infrastructure" layer).
EntityGraph now keeps 1-hop neighbors visible but dimmed instead of
hiding them, so the edges — and what they connect to — stay visible.
- categories.ts: `cognition` domain conflated true knowledge (document/
investigation/runbook, 58 entities) with operational telemetry
(execution/check/task/signal/approval/pattern/skill/classification/
feedback, 300+ entities with their own Operations/Signals/Learning
pages). Mapping the whole domain to Knowledge pulled in 245 execution
entities fanning out from ~17 compute nodes via `targets` edges — the
single biggest source of graph clutter. Knowledge now maps by type
(document/investigation/runbook only); the rest of cognition is
excluded from Knowledge Base browsing entirely.
Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Phase 0 of plans/2026-07-12-wails-desktop-app.md. The control-room SPA
is no longer embedded (web/embed.go deleted); it's a standalone static
build served separately (make ui / make deploy-ui). The api process
adds CORS and drops the dev-open auth bypass — every route now needs a
real bearer token, including SSE (?token= query param, EventSource
can't set headers) and api's own /agent proxy to nomos (previously
unauthenticated by omission).
nomos was an unauthenticated client of api's /mcp and approval-decision
endpoints; closing dev-open would have broken it, so it now sends
Authorization: Bearer $OIKOS_MCP_BEARER_TOKEN on every call back to api.
SPA gets a runtime config module (config.ts) and a Config.svelte
first-launch/reconfigure page, reachable afterwards via a "Connection"
entry in the sidebar footer. Every fetch() in api.ts routes through
fetchWithAuth so the same build works same-origin (browser prod, Vite
dev proxy) or cross-origin (future Wails webview, remote access).
Six gaps found against the plan and the live Caddy topology while
implementing — documented in the plan's "Plan review" section, most
notably: api's own /agent mount was never behind combinedAuth (fixed),
and production's Authentik forward-auth needs a bearer-token bypass for
API routes that this repo's Caddyfile.oikos reference copy now has, but
the real dtoro/caddy-conf deploy does not yet.
Verified live: cross-origin static SPA + API, CORS, bearer auth, SSE
query-token auth, and localStorage persistence all confirmed working
in-browser. Full Go test suite and npm run build pass with no
regressions against the pre-change baseline.
Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Fixes B1 and B2 of plans/2026-07-11-nomos-agent-code-review.md together,
since the right granularity for B1 in the auto-continuation worker turned
out to require B2's restructuring anyway (see below).
B1: grep -rn "recover()" cmd/nomos/ internal/mcp/ internal/httpapi/ returned
nothing before this — every explicitly-spawned goroutine (continuation
worker, resumed chat turns, async execution dispatch, the SSE listener, two
duplicate sshExec implementations' output-collector goroutines) crashed the
whole process on an unhandled panic, not just that one goroutine. More
consequential post-concurrency: more simultaneous unattended background work
means more surface area for one bad input to end every running task.
New internal/safego package: Go(label, fn) launches fn in a goroutine with a
recover-and-log wrapper. Applied at every bare `go` spawn site across the
three packages. Two sites needed bespoke handling instead of the generic
helper because their callers block on a channel and a silent recover would
just make them hang until timeout: sshExec's output-collector goroutine (two
near-identical copies, internal/mcp/server.go and internal/httpapi/phase3.go)
and httpapi's ListenAndServe goroutine — both now recover AND send a
synthetic error result so the waiting select unblocks immediately instead of
waiting out the full timeout.
httpapi's sseListener got extra treatment: its per-notification handling was
extracted into handleNotification with its own recover, so a panic decoding
ONE malformed pg_notify payload can't kill the listener goroutine for every
connected SSE client — the outer goroutine spawn only needs to guard the
connection setup/reconnect code around it.
B2: cmd/nomos/continue.go's processContinuations used to run every pending
continuation SEQUENTIALLY in a plain for loop, in the SAME goroutine as the
ticker — meaning (a) task B's continuation waited for task A's full (up to
10-minute) resumed turn to finish first, undercutting this session's earlier
concurrency work on exactly the path autonomous tasks depend on most, and
(b) an unrecovered panic anywhere in that call chain didn't just crash the
process (B1) — even WITH B1's recovery wrapped only at the top-level worker
spawn, the panic would still unwind the ENTIRE ticker-loop goroutine,
silently ending auto-continuation for every task until nomos restarted.
Fixed by spawning each pending item via safego.Go individually: real
parallelism, and a bad item can now only ever take down its own goroutine.
Added internal/safego/safego_test.go: TestGo_RecoversPanic is the concrete
proof — a deliberate panic inside Go() that would otherwise crash the whole
test binary; reaching the assertion after it IS the evidence recovery works.
Verified live against the rebuilt containers: full chat turn round-tripped
correctly (hostname lookup, 2 iterations, normal completion) — no regression
from threading safego.Go through the tool-dispatch/continuation paths.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
The plan's "learning view" (runbook success-rate trends, promoted
skills, capability timeline) assumes the patterns/skills/feedback
pipeline is populated. It isn't: all three tables are empty in
production and nothing in the codebase ever writes to feedback, so
building the UI against them today would ship a permanently-empty
page. Scoped instead around data that's real and growing —
executions — while still wiring up /patterns and /skills so the page
needs no rework once that pipeline exists.
New /api/v1/learning/timeline (per-verb first-success date + success
rate, parsed via the existing splitAction helper) and
/api/v1/learning/trend (30-day daily success/fail counts), both
read-only queries against executions. Patterns and skills sections
call the existing (untouched) ListPatterns/ListSkills endpoints and
render an explanatory empty state instead of nothing.
Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Ops "Executions" tab showed raw target UUIDs, alphabetical (not
recency) order, and a stale status vocabulary from an earlier schema
iteration — never actually usable as a live "what's happening" view.
Replaced with a new recency-ordered /api/v1/activity/recent endpoint
and matching table (human-readable action summaries, risk/status
badges, duration, inline error preview).
Also added /api/v1/activity/session/{id} + a collapsible SessionDigest
panel in the chat rail, answering "what did this session actually do"
(executions by status, entities touched, knowledge written) — the
missing piece for proactive outcome reporting to be visible in the UI,
not just in the chat transcript.
Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
First slice of the observability/learning UI (the "see the system come alive
and learn" ask). The Knowledge page was search-only — blank until you typed —
so the knowledge Nomos now writes via upsert_knowledge was invisible unless
you knew to search for it. Now the page LEADS with what the system knows and
is learning:
- internal/httpapi/knowledge.go: GET /api/v1/knowledge/recent — recency-ordered
knowledge + a stats header (total, agent-authored, learned-this-week,
by-kind). Custom route (not OpenAPI-generated), same auth as the rest.
- web Knowledge page rewrite: stat cards up top (Total / Written by Nomos /
Learned this week / runbooks-investigations), then a "Recently learned" feed
with agent-authored notes highlighted and badged "learned by Nomos", tags,
and relative timestamps. A toggle filters to Nomos-only. Search still works,
now as a mode you enter/clear rather than the whole page.
This turns "the system is getting smarter" from a claim into something you
watch fill up: every gotcha the agent records shows here within seconds.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Phase 1 implementation from the client-lifecycle plan.
- Migration 012: provisioning_steps table, context_version, context_files,
enrolled_at column, slug+type index for machine entities
- API endpoints (openapi.yaml + generated code):
POST /clients/enroll — age key issuance, Infisical identity, state transition
GET /clients/{slug}/context — agent file delta polling (replaces git pull)
GET /clients/{slug}/secrets — scoped secret listing
POST /entities/provision — compute entity creation with constraint validation
GET /entities/{slug}/provision/status — step-by-step provisioning progress
- Handlers in impl.go: enrollment with state validation and age key generation,
provisioning with execution tracking and relationship creation,
context endpoint with since-based delta queries
- Server struct extended with secretsBackend interface for key storage
- All tests pass, build clean
The generated strict-server path could only return an io.Reader that
io.Copy drains without flushing, so SSE events sat chunk-buffered instead
of streaming in real time. Replace it with a raw http.ResponseWriter
handler (serveSSE) that Flush()es after every event.
Routing: chi allows a later registration to supersede an earlier one for
the same method+path (verified empirically for v5.3.1), so serveSSE is
registered on the router AFTER gen.HandlerWithOptions and wins over the
generated /events/stream route. It inherits the base middleware chain and
applies auth via With(). The generated StreamEvents method now returns an
error (never reached) so a routing regression fails loudly rather than
silently reverting to buffered delivery.
Adds TestSSEStreamRealtimeDelivery: a real httptest.NewServer + streaming
client (NewRecorder can't flush) that connects, triggers an event, and
asserts delivery within 3s — proving both the override routing and
per-event flushing. Passes in <1s.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Reviewed the phase-2 implementation (parts 2–5) end to end. The suite hung
for 600s and several handlers were never exercised because there were no
tests for the new mutation/event/MCP surface. Fixes:
- CRITICAL: sseListener ran on context.Background() and held a pooled
connection forever, so pool.Close() deadlocked (600s test timeout).
NewHandler now takes a ctx that governs the listener; ListenAndServe and
the test helper cancel it before closing the pool.
- CRITICAL: MCP AddTool panicked ("missing input schema") at construction
under go-sdk v1.6.1 — so NewHandler (and every API handler) panicked.
Added object input schemas to all 8 tools via an objSchema helper.
- HIGH: PatchEntity parsed lifecycle transitions as map[string][]string but
the shape is {from:{to:{requires:[]}}}, so every state-change PATCH 500'd.
Parse the nested shape; allow same-state no-ops.
- HIGH: CreateEntity bound SQL NULL for attributes when omitted, violating
the NOT NULL column (the default only applies when omitted). Default to
'{}'.
- MED: serveSSEWriter ignored the request ctx (per-client goroutine leak on
disconnect) and set an invalid Content-Length: -1. Thread ctx through;
omit the header. writeSSE now nil-checks the flusher (io.Pipe path passed
nil → would have panicked on first event).
- MED: SSE `data:` leaked raw sqlcgen.Event (PascalCase, base64 JSONB).
Emit canonical gen.Event so SSE matches GET /events. Verified live.
- LOW: CreateEntity uses uuid.NewV7 (ADR-0005) + real actor from context in
audit; removed dead bearerAuth; fixed vet unkeyed-field warnings.
Tests (would have caught all of the above): entity create/patch with
If-Match 409/400, valid+invalid lifecycle transitions, idempotency replay,
duplicate-slug 409, abstract-type 422, event+audit side effects, MCP tool
registration. Live smoke test confirmed NOTIFY→listener→SSE delivery.
Also adds the missing Phase 2 deliverable: Gitea Actions CI (vet,
golangci-lint, govulncheck, generated-code drift guard, race tests against
TimescaleDB, docker build) and wires sqlc into `make generate`.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
- SSE stream: GET /events/stream using io.Pipe to bridge the SSE
goroutine to the response body. Replay from Last-Event-ID via
in-memory broker with DB fallback. LISTEN/NOTIFY fan-out to all
subscribers. Heartbeat every 15s. Bounded channels.
- OIDC JWT auth: validates Bearer tokens against Authentik/OIDC
issuer via JWKS discovery + key caching. Extracts sub/email into
context actor. Falls back to static bearer tokens. Dev mode (no
OIDC + no tokens) = open.
- Config: OIDCIssuer, OIDCClientID env vars
- SSE + OIDC infrastructure complete, build passes, all tests pass
Remaining: MCP server, conformance tests, wire audit middleware
