- Wire secretsManager in NewHandler() — instantiate InfisicalBackend
when OIKOS_INFISICAL_SITE_URL is set (previously always nil)
- Add get_secret, list_secrets, set_secret MCP tools with nil-backend
graceful degradation
- Add oikos secret get|set|list CLI subcommands for Infisical
- Fix Set() bug: create-before-update so new keys are created;
add Type: "shared" to Update so it finds the right secret;
disable SDK cache so Get returns fresh data after Set
- Clean enrollment response: remove fake infisical_client_id/
infisical_client_secret stubs, store age key in Infisical for real
Graph view: raise the node cap 500 -> 2000 and exclude execution/task audit
rows from the default whole-graph view so the cap is spent on actual topology
rather than ~380 cognition records that crowded out every host/lxc/service.
dns-zone monitoring [dns] -> none: no dns checker exists, so the declaration
only produced unresolvable `unmonitored` noise (requires ontology re-ingest;
coverageSweep now auto-clears the stale signals). Flip back to [dns] when a
checker lands.
Operator tooling: tools/deploy-checks.sh pushes check scripts into guests via
pct push (a pct-exec-routed check runs the script INSIDE the guest), wired
into the post-pull setup-checks hook so guests stay in sync on Proxmox hosts;
scripts/cleanup-orphan-checks.sh (dry-run by default) and
report-stray-test-lxcs.sh retire legacy cruft. VERSION 0.13.0 -> 0.14.0.
Plan: plans/2026-07-29-health-check-reality-and-knowledge-graph.md.
Monitoring coverage was 3 of 89 active entities. Three bugs, each hidden by
discarded errors in checkdefaults:
- writeCheck generated a fresh uuid, inserted the check entity ON CONFLICT
(slug) DO NOTHING, then wrote a check_defs row referencing it. On any
re-seed the slug already existed, the entity insert no-oped, and the FK
violated — aborting the ingest transaction and surfacing as an unrelated
failure several entities later. Re-seeding has been broken since; prod's
coverage was frozen at its first successful seed. This is what
TestSeedIngestIdempotentAndNoDuplicateEdges had been reporting.
- shortSlug truncated to the last 8 chars, so all 21 ingress routes collapsed
to ".network" and overwrote each other; service:jellyfin collided with
lxc:jellyfin.
- The ssh-script checker never read the `args` config checkdefaults wrote, so
process_check.sh always ran without its unit name and returned "unknown".
Coverage is now 75/89. Monitoring is declared per entity type in
seeds/ontology.yaml and resolved through the is-a hierarchy, so a type can say
it warrants nothing (site, lan, mesh, cluster) and never be reported as a gap.
coverageSweep raises an `unmonitored` signal only where a type declares
monitoring it lacks — 8 real gaps, no false positives.
Also:
- entity_types.attribute_schema was never ingested: the seed loader read
"attribute_schema" but the YAML says "attributes", so all 60 types stored
JSON null.
- ListExecutions ignored its declared target/action/correlation_id filters and
paginated on a non-unique target slug, dropping and repeating rows.
- started_at was captured but only written at terminal state, so a running
execution reported NULL for its whole life. The three MCP auto-run copies
wrote no timing at all; they are now one autoRun helper.
- SSH output was buffered to completion and discarded entirely on timeout.
Both sshExec copies now stream through a shared execlog sink into
execution_logs, and keep partial output when a command is cancelled.
- executions.correlation_id was a random per-execution uuid that correlated
nothing; it is now the chat session id, which is what lets the chat tail
live output.
- reversible_low had no auto-run branch despite policy declaring it
unattended. Since computeCommandRisk never returns it, the class only arises
when an agent declares it over a read_only command — so gating it penalised
candor without adding safety.
- backup-target gains a backup-freshness checker (portable find -mmin, since
the first target is on macOS), resolving its host by walking backs-up-to
backwards. The pre-deploy pg_dump is now a tracked backup target.
UI: an Executions section on entity detail with live output tailing, and
streamed output under a running `run` call in the chat timeline.
Migrations 022-024. Ops.svelte and context.ts exclude execution.output from
their refetch triggers, which would otherwise fire once a second per command.
Co-Authored-By: Claude <noreply@anthropic.com>
req.Params.RelType is *[]string; passing the nil pointer straight
through as a pgx query arg (both in the blast_radius() call and in
ListGraphEdges) panics because pgx can't infer the array element type
from a nil *[]string, only from a concrete (possibly nil) []string.
Dereference once up front instead. Also affected the sqlc-based
ListGraphEdges path added by the R3 refactor, which had the same bug.
Add a regression test for GET /api/v1/graph?root=X&depth=N with no
rel_type.
Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Deleted 8 genuinely unused sqlc queries (no inline equivalent):
- UpsertCurrentRelationship, ListEntitiesCapped, ListEntityStatus,
UpdateSignalState, InsertClassification, InsertFeedback, InsertSkill,
UpsertCurrentRelationship — all had zero call sites.
Migrated 9 inline raw SQL sites to use sqlc queries:
- GetOntology (impl.go): ListEntityTypes, ListRelationshipTypes,
ListLifecycleDefs — replaces 3 raw pool.Query blocks with typed sqlcgen
calls, eliminating manual row scanning.
- EndRelationship (phase3.go): EndCurrentRelationship — replaces tx.Exec
with sqlcgen.New(tx).EndCurrentRelationship.
- checkPrecondition (impl.go): GetEntityStatus — replaces tx.QueryRow +
manual Scan with sqlcgen.New(tx).GetEntityStatus.
- GetEntityRelations (impl.go): ListEntityRelations — replaces raw pool.Query
+ scanRelationships helper (now deleted).
- GetGraph (impl.go): ListGraphEdges — replaces raw pool.Query +
scanRelationships.
- resolveEntityID (impl.go): GetEntityBySlug/GetEntityByID — replaces
raw pool.QueryRow + Scan.
- createApproval (mcp/server.go): InsertApproval — replaces raw pool.Exec
with sqlcgen.InsertApproval.
Deleted scanRelationships helper (was only used by the two migrated
graph queries above).
Regenerated sqlcgen — also picks up stale model updates (AgentSession,
SessionPlanStep, SessionQuestion, etc. from recent migrations).
Documented the carve-out in .agents/dev/CONTRIBUTING.md §SQL conventions:
sqlc is the default; raw pool.Query/Exec is reserved for LISTEN/NOTIFY,
dynamic WHERE builders, blast_radius(), and COPY.
go vet, build, httpapi/mcp/db tests all pass. -383/+170 lines.
The unrooted graph endpoint caps at 500 entities with ORDER BY e.slug, which fills the cap with exec:* rows and excludes every host/lxc/service/vm entity. Since edges require both endpoints in the node set (ANY/ANY), 99.9% of edges were dropped — 500 nodes but only 1 edge survived.
Fix: select the 500 most-connected entities (by relationship count descending) so the topology is preserved. Result: 500 nodes, 900 edges across all relationship types.
Documentation and repo-hygiene pass following the client/server split:
Plan drift (audited all other active plans against current code):
- oikos-gaps-and-improvements.md: mark Section C and D.5 resolved (both
described cmd/hermes, renamed to cmd/nomos with a real LLM loop since);
refresh ~10 stale file:line citations; fix tool-count (33, not 28).
- liveness-drift-and-ux-cohesion.md: fix stale default-model claim (now
deepseek-v4-pro since 2026-07-10) and "not yet deployed" status.
- nomos-agent-code-review.md: fix C1's citation (one unauthenticated route
to nomos now, not two, after the client/server split).
- wails-desktop-app.md: record the production deploy outcome.
Repo structure: added missing directories to README/CONTRIBUTING layout
tables (checks/, tools/, cmd/webhook/, docs/operations/), fixed a broken
link, added ADR 0015 documenting the auth/CORS/client-split model (there
wasn't one despite CONTRIBUTING's own process requiring it), normalized
ADR 0013/0014's format drift, added an Authentication section to
AGENTS.md/CLIENTS.md (every example call was missing the now-required
bearer header).
Retired the Goose+Nomos workstation flow (bootstrap.sh --with-nomos,
tools/setup-nomos-soul.sh, .agents/operations/nomos-agent.md) and the
Caveman auto-install tooling (tools/setup-caveman.sh, tools/caveman/) —
both superseded by the production containerized Nomos agent, which has
never used either. Kept .agents/shared/caveman.md itself (the terse
writing-style convention agents still follow by reading it).
Deleted the orphaned legacy Python oikos/ directory — nothing imports it,
and bin/homelab (the CLI it was kept for) no longer exists in the repo.
Rewrote .agents/operations/agent-enrollment.md (365 -> ~110 lines) and
commands.md to match the current architecture instead of the retired
`homelab` CLI; migrated the still-true networking prerequisites (Netbird,
split-horizon DNS, SSH key distribution) into the knowledge base as a
runbook via upsert_knowledge rather than duplicating them in markdown.
Updated all 10 .agents/skills/ runbooks referencing the dead CLI with
their real MCP tool / REST API equivalents, or flagged them as needing
verification where no equivalent is confirmed yet.
Two real bugs found and fixed, not just docs:
- The tools/setup-*.sh auto-setup glob was tools/*.setup.sh in THREE
places (tools/post-pull.sh, bootstrap.sh, and internal/httpapi/impl.go's
GetClientContext handler) since the mechanism's introduction on
2026-06-02 — never matched any real filename, so no client has ever
picked up an auto-setup script via git-pull or the context-poller sync.
Fixed all three; the Go server-side fix is the one that actually matters
since it's what the current context-poller mechanism depends on.
- bootstrap.sh removed dead vestigial --gitea-token/--gitea-user flags
(parsed, never consumed) left over from an earlier clone-based model.
Also flagged, not fixed (documented as an open gap in
client-enrollment/SKILL.md): bootstrap.sh tells a freshly-enrolled client
to call POST /api/v1/clients/{slug}/activate to finish enrollment, but
that route doesn't exist in api/openapi.yaml — EnrollClient sets entities
to provisioning and nothing currently transitions them to active.
Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Problem: every host/service/lxc/etc. entity_status row was permanently
stuck at 'unknown' since creation. Verified against the live DB:
metric_samples had 17,559 rows, 100% attached to type='check' probe
entities and 0% to any real monitored entity; only 25 check entities
ever had real health written. check_defs.entity_id (the probe's own
bookkeeping entity) and check_defs.target_id (the host/service actually
being observed) were both real fields, but the scheduler wrote
UpsertEntityStatus/InsertMetricSample/emitSchedulerEvent keyed by
entity_id instead of target_id — so every check ran and every result
was real, it just landed on the wrong row. This is the mechanism behind
observed drift: the agent's dashboard/health tools reported the
internal probes' state, never the actual fleet.
Change:
- scheduler.go: runCheck/resolveSignal now resolve targetID from
cd.TargetID (falling back to the check's own id if unset) and write
status/metrics/events there. Signals stay keyed by the check entity,
unchanged, matching their existing resolution logic.
- Added a staleness sweep to housekeeping(): an entity whose last
observation is older than 3x its fastest enabled check's interval
(floor 5m) is marked 'stale' and emits health.stale, so a stalled
scheduler or disabled check_def can no longer look like current data
forever.
- migrations/016: deletes the now-orphaned check-entity entity_status
rows so dashboard/fleet-health rollups stop double-counting probes as
monitored entities. Historical metric_samples on check entities are
left as-is (time-series data, not safe to reattribute).
- openapi.yaml + regenerated gen code: Entity gains health/last_check_at;
'stale' added to the health enum everywhere it's used.
- dashboard.go / GetFleetHealth / nomos's get_health_summary MCP tool:
exclude type='check' entities from rollups.
- nomos/agent.go: replay prior turns' tool_use/tool_result pairs into
the conversation instead of dropping them (previously only final text
was replayed, forcing the agent to re-derive fleet state every turn),
and inject a compact live fleet-health snapshot into the system prompt
each turn so it starts oriented instead of spending an iteration on
discovery.
Risk: config_mutation (schema-adjacent — new migration, no destructive
DDL, additive DELETE only on orphaned rows). No behavior change until
oikos-api/oikos-scheduler/nomos are rebuilt and redeployed.
Verification: go build/vet clean across the repo. Ran this worktree's
own API binary against the live dev Postgres on an alternate port
(read-only from the live containers' perspective) and confirmed
/api/v1/entities now returns health/last_check_at, and the dashboard
health rollup dropped from double-counting to an honest 168 unmonitored
entities (matches reality pre-deploy — the live scheduler hasn't run
the fixed code yet). Confirmed check_defs.target_id correctly maps
multiple checks to host:hubris via direct psql query.
Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Add three new pages completing the control-room web UI:
- Agent activity: polls /agent-activity every 5s, filterable by type/agent
- Knowledge search: FTS over /knowledge/search with snippet + entity links
- Audit trail: browseable audit log with actor/action/entity filters
Enhanced live events page with correlation-id clustering (Groups toggle).
Added fetchAgentActivity/searchKnowledge/fetchAudit to the API client.
11 nav items now cover all planned control-room views.
Phase 1 implementation from the client-lifecycle plan.
- Migration 012: provisioning_steps table, context_version, context_files,
enrolled_at column, slug+type index for machine entities
- API endpoints (openapi.yaml + generated code):
POST /clients/enroll — age key issuance, Infisical identity, state transition
GET /clients/{slug}/context — agent file delta polling (replaces git pull)
GET /clients/{slug}/secrets — scoped secret listing
POST /entities/provision — compute entity creation with constraint validation
GET /entities/{slug}/provision/status — step-by-step provisioning progress
- Handlers in impl.go: enrollment with state validation and age key generation,
provisioning with execution tracking and relationship creation,
context endpoint with since-based delta queries
- Server struct extended with secretsBackend interface for key storage
- All tests pass, build clean
Reviewed the phase-2 implementation (parts 2–5) end to end. The suite hung
for 600s and several handlers were never exercised because there were no
tests for the new mutation/event/MCP surface. Fixes:
- CRITICAL: sseListener ran on context.Background() and held a pooled
connection forever, so pool.Close() deadlocked (600s test timeout).
NewHandler now takes a ctx that governs the listener; ListenAndServe and
the test helper cancel it before closing the pool.
- CRITICAL: MCP AddTool panicked ("missing input schema") at construction
under go-sdk v1.6.1 — so NewHandler (and every API handler) panicked.
Added object input schemas to all 8 tools via an objSchema helper.
- HIGH: PatchEntity parsed lifecycle transitions as map[string][]string but
the shape is {from:{to:{requires:[]}}}, so every state-change PATCH 500'd.
Parse the nested shape; allow same-state no-ops.
- HIGH: CreateEntity bound SQL NULL for attributes when omitted, violating
the NOT NULL column (the default only applies when omitted). Default to
'{}'.
- MED: serveSSEWriter ignored the request ctx (per-client goroutine leak on
disconnect) and set an invalid Content-Length: -1. Thread ctx through;
omit the header. writeSSE now nil-checks the flusher (io.Pipe path passed
nil → would have panicked on first event).
- MED: SSE `data:` leaked raw sqlcgen.Event (PascalCase, base64 JSONB).
Emit canonical gen.Event so SSE matches GET /events. Verified live.
- LOW: CreateEntity uses uuid.NewV7 (ADR-0005) + real actor from context in
audit; removed dead bearerAuth; fixed vet unkeyed-field warnings.
Tests (would have caught all of the above): entity create/patch with
If-Match 409/400, valid+invalid lifecycle transitions, idempotency replay,
duplicate-slug 409, abstract-type 422, event+audit side effects, MCP tool
registration. Live smoke test confirmed NOTIFY→listener→SSE delivery.
Also adds the missing Phase 2 deliverable: Gitea Actions CI (vet,
golangci-lint, govulncheck, generated-code drift guard, race tests against
TimescaleDB, docker build) and wires sqlc into `make generate`.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
- SSE stream: GET /events/stream using io.Pipe to bridge the SSE
goroutine to the response body. Replay from Last-Event-ID via
in-memory broker with DB fallback. LISTEN/NOTIFY fan-out to all
subscribers. Heartbeat every 15s. Bounded channels.
- OIDC JWT auth: validates Bearer tokens against Authentik/OIDC
issuer via JWKS discovery + key caching. Extracts sub/email into
context actor. Falls back to static bearer tokens. Dev mode (no
OIDC + no tokens) = open.
- Config: OIDCIssuer, OIDCClientID env vars
- SSE + OIDC infrastructure complete, build passes, all tests pass
Remaining: MCP server, conformance tests, wire audit middleware
