10 routes are registered manually on the chi router in server.go rather
than generated from openapi.yaml. Added a 'Non-OpenAPI routes' comment
block at the top of NewHandler listing each route with its structural
reason for the carve-out:
- Auth/infra: /healthz, /api/v1/auth/oidc-*, /oidc-callback — bypass
auth middleware or aren't JSON API
- SSE override: /api/v1/events/stream — re-registered for Flush()
- Ad-hoc aggregations: /knowledge/recent, /knowledge/content/{id},
/activity/recent, /activity/session/{id}, /learning/timeline,
/learning/trend — derived shapes with no schema type yet
Updated .agents/dev/CONTRIBUTING.md §OpenAPI codegen with the carve-out
policy: if an ad-hoc route stabilizes, promote it to openapi.yaml with a
proper schema and migrate the serve* function to a strict handler.
Deleted 8 genuinely unused sqlc queries (no inline equivalent):
- UpsertCurrentRelationship, ListEntitiesCapped, ListEntityStatus,
UpdateSignalState, InsertClassification, InsertFeedback, InsertSkill,
UpsertCurrentRelationship — all had zero call sites.
Migrated 9 inline raw SQL sites to use sqlc queries:
- GetOntology (impl.go): ListEntityTypes, ListRelationshipTypes,
ListLifecycleDefs — replaces 3 raw pool.Query blocks with typed sqlcgen
calls, eliminating manual row scanning.
- EndRelationship (phase3.go): EndCurrentRelationship — replaces tx.Exec
with sqlcgen.New(tx).EndCurrentRelationship.
- checkPrecondition (impl.go): GetEntityStatus — replaces tx.QueryRow +
manual Scan with sqlcgen.New(tx).GetEntityStatus.
- GetEntityRelations (impl.go): ListEntityRelations — replaces raw pool.Query
+ scanRelationships helper (now deleted).
- GetGraph (impl.go): ListGraphEdges — replaces raw pool.Query +
scanRelationships.
- resolveEntityID (impl.go): GetEntityBySlug/GetEntityByID — replaces
raw pool.QueryRow + Scan.
- createApproval (mcp/server.go): InsertApproval — replaces raw pool.Exec
with sqlcgen.InsertApproval.
Deleted scanRelationships helper (was only used by the two migrated
graph queries above).
Regenerated sqlcgen — also picks up stale model updates (AgentSession,
SessionPlanStep, SessionQuestion, etc. from recent migrations).
Documented the carve-out in .agents/dev/CONTRIBUTING.md §SQL conventions:
sqlc is the default; raw pool.Query/Exec is reserved for LISTEN/NOTIFY,
dynamic WHERE builders, blast_radius(), and COPY.
go vet, build, httpapi/mcp/db tests all pass. -383/+170 lines.
Documentation and repo-hygiene pass following the client/server split:
Plan drift (audited all other active plans against current code):
- oikos-gaps-and-improvements.md: mark Section C and D.5 resolved (both
described cmd/hermes, renamed to cmd/nomos with a real LLM loop since);
refresh ~10 stale file:line citations; fix tool-count (33, not 28).
- liveness-drift-and-ux-cohesion.md: fix stale default-model claim (now
deepseek-v4-pro since 2026-07-10) and "not yet deployed" status.
- nomos-agent-code-review.md: fix C1's citation (one unauthenticated route
to nomos now, not two, after the client/server split).
- wails-desktop-app.md: record the production deploy outcome.
Repo structure: added missing directories to README/CONTRIBUTING layout
tables (checks/, tools/, cmd/webhook/, docs/operations/), fixed a broken
link, added ADR 0015 documenting the auth/CORS/client-split model (there
wasn't one despite CONTRIBUTING's own process requiring it), normalized
ADR 0013/0014's format drift, added an Authentication section to
AGENTS.md/CLIENTS.md (every example call was missing the now-required
bearer header).
Retired the Goose+Nomos workstation flow (bootstrap.sh --with-nomos,
tools/setup-nomos-soul.sh, .agents/operations/nomos-agent.md) and the
Caveman auto-install tooling (tools/setup-caveman.sh, tools/caveman/) —
both superseded by the production containerized Nomos agent, which has
never used either. Kept .agents/shared/caveman.md itself (the terse
writing-style convention agents still follow by reading it).
Deleted the orphaned legacy Python oikos/ directory — nothing imports it,
and bin/homelab (the CLI it was kept for) no longer exists in the repo.
Rewrote .agents/operations/agent-enrollment.md (365 -> ~110 lines) and
commands.md to match the current architecture instead of the retired
`homelab` CLI; migrated the still-true networking prerequisites (Netbird,
split-horizon DNS, SSH key distribution) into the knowledge base as a
runbook via upsert_knowledge rather than duplicating them in markdown.
Updated all 10 .agents/skills/ runbooks referencing the dead CLI with
their real MCP tool / REST API equivalents, or flagged them as needing
verification where no equivalent is confirmed yet.
Two real bugs found and fixed, not just docs:
- The tools/setup-*.sh auto-setup glob was tools/*.setup.sh in THREE
places (tools/post-pull.sh, bootstrap.sh, and internal/httpapi/impl.go's
GetClientContext handler) since the mechanism's introduction on
2026-06-02 — never matched any real filename, so no client has ever
picked up an auto-setup script via git-pull or the context-poller sync.
Fixed all three; the Go server-side fix is the one that actually matters
since it's what the current context-poller mechanism depends on.
- bootstrap.sh removed dead vestigial --gitea-token/--gitea-user flags
(parsed, never consumed) left over from an earlier clone-based model.
Also flagged, not fixed (documented as an open gap in
client-enrollment/SKILL.md): bootstrap.sh tells a freshly-enrolled client
to call POST /api/v1/clients/{slug}/activate to finish enrollment, but
that route doesn't exist in api/openapi.yaml — EnrollClient sets entities
to provisioning and nothing currently transitions them to active.
Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Problem: Repo had no developer guide, no client onboarding doc, no agent
dev instructions. Stale files (675KB SQL dump, one-off convert script,
legacy MCP builder) cluttered the tree. Client enrollment was a documented
intention with no Go implementation.
Changes:
- New docs: CONTRIBUTING.md (dev setup), CLIENTS.md (client onboarding),
.agents/dev/CONTRIBUTING.md (agent codebase map)
- New plan: plans/2026-07-07-client-lifecycle-in-go.md — full client
lifecycle (planned→provisioning→active→deprecated→destroyed) in Go,
replacing archived Python secrets-issuance, adding client API endpoints
and 6 missing MCP tools
- Cleanup: deleted archive/convert-wiki.py (one-off), archive/mcp/
build_host_files.py (legacy), backups/pre-deploy-7f7d039.sql (local)
- Fixes: plans/index.md duplicate row removed, README.md repo layout
updated for current state, AGENTS.md header points to new guides
Risk: low. Docs only + stale file deletion. No code changes. New plan is
proposal, not implementation.
Verification: git diff reviewed, all changes are prose/docs/plans.
