Rewrote .agents/domains/knowledge/schema.md and .agents/shared/llm-wiki.md
which described the deleted Python substrate (bin/homelab, oikos/cards/,
oikos/ledger.py, root inventory.yaml, knowledge/sources/, get_page/
search_docs MCP tools). Now reflect ADR 0003: Postgres DB is the single
source of truth for structured data and narrative knowledge; seeds/*.yaml
are bootstrap+DR manifests (content-hashed via seed_versions); archive/
knowledge/ is the frozen legacy wiki; MCP search_knowledge/get_entity_
knowledge replace get_page/search_docs.
Swept substrate refs in .agents/shared/{writing-style,page-templates}.md
and .agents/domains/operations/schema.md: bare inventory.yaml ->
seeds/inventory.yaml; knowledge/sources/ -> archive/knowledge/sources/
(historical); get_changelog/oikos/ledger.py -> DB audit trail / structured
document changelog field; HERMES -> Nomos.
Root inventory.yaml (618-line Python-era file superseded 2026-07-07 by
seeds/inventory.yaml) replaced with a deprecation stub pointing to the seed
and DB. Kept as a stub rather than deleted because AGENTS.md §1/§2 still
point clients at /opt/homelab-context/inventory.yaml; full on-client path
reconciliation deferred to R13.
Flagged export gap: oikos export regenerates seeds/{ontology,inventory,
policy}.yaml but NOT seeds/knowledge.yaml — API-added knowledge lives only
in the DB until hand-edited into the seed.
VERSION 0.7.7 -> 0.7.8. Plan R5 marked done.
Problem: after the wiki-hq reorg, agent-instruction and human-doc domains
were still scattered across the repo root, with three now-redundant stub
files cluttering it. The organizing principle wasn't visible in the layout.
Change — enforce three clear buckets:
- .agents/ = how agents operate: OIKOS.md, HERMES.md (moved from root),
shared/ conventions, domains/ schemas, skills/, and operations/ (operator
cheatsheet + enrollment + hermes-agent, moved from root).
- knowledge/ = what exists + evidence: wiki/, GLOSSARY.md, and sources/ now
including investigations/ (incident records are evidence/sources).
- root = substrate + two entry points (AGENTS.md, README.md), plus plans/
as its own design-intent domain.
Moves:
- investigations/ -> knowledge/sources/investigations/ (incl. archive/, index).
- operations/ -> .agents/operations/.
- HERMES.md -> .agents/HERMES.md.
- Deleted unreferenced root stubs CAVEMAN.md, CONTRIBUTING.md, and OIKOS.md
(its 7 remaining linkers repointed to .agents/OIKOS.md).
Consumers updated:
- inventory.yaml doc_page (agent-enrollment) + regenerated hosts/*.yaml + cards.
- tools/setup-hermes-soul.sh and bootstrap.sh (x2) -> .agents/HERMES.md.
- bin/homelab help string -> .agents/operations/hermes-agent.md.
- knowledge/operations schemas, llm-wiki, page-templates, incident-investigation
skill, AGENTS.md/README nav -> new investigations/operations paths.
- All markdown links rewritten via the path-resolving mapper.
Left in place (substrate/executable/separate-domain): hosts/, ledger/, tools/,
plans/, oikos/, mcp/, secrets/, bin/, inventory.yaml.
Verification: docs-lint at baseline (2 intentional cross-repo refs, no new
breakage); gen-topology.py --check exit 0; build_host_files.py idempotent; all
doc_page targets resolve; Hermes provisioning scripts point at the new path.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Problem: runbooks are agent-executable procedures but lived at the repo root,
separate from the other agent instruction now under .agents/.
Change:
- Move runbooks/<name>.md -> .agents/skills/<name>/SKILL.md (folder per skill,
matching the wiki-hq skills layout). Frontmatter (name, risk_class, inputs,
verification, docs_update_checklist, transition) preserved.
- Rewrite links (inbound from plans; between-skill siblings) via the move map.
- Update prose references in AGENTS.md, HERMES.md, .agents/OIKOS.md, and the
operations schema; fix a pre-existing stale link to operations/commands.md.
No code consumed runbooks/ by path, so nothing else changes.
Verification: all SKILL.md frontmatter parses with valid risk_class; every
lifecycle transition resolves to an oikos/ontology.yaml state; broken-link
count 127 -> 126 (fixed one, introduced none).
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Problem: the narrative docs lacked an enforceable style standard, and
agent-facing instruction (OIKOS/CAVEMAN/CONTRIBUTING) was interleaved with
human content at the repo root.
Change:
- Add .agents/shared/{writing-style,llm-wiki}.md — a lint-checkable prose
standard (with an imperative-voice exception for runbooks/recipes) and the
sources/wiki/index/log layer model.
- Move CAVEMAN.md -> .agents/shared/caveman.md,
CONTRIBUTING.md -> .agents/shared/page-templates.md,
OIKOS.md -> .agents/OIKOS.md; leave thin root stubs so old links resolve.
- Add .agents/domains/{knowledge,operations}/schema.md; operations schema
codifies "plans always live in plans/".
- Repoint live references (AGENTS, README, GLOSSARY, OIKOS) and fix OIKOS.md's
internal relative links for its new depth.
Risk: none to the operational substrate — inventory.yaml, hosts/*.yaml,
oikos/, mcp/, secrets/, bin/ untouched (verified via git status).
Verification: relative-link check across .agents/ clean; substrate churn empty.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
