sync AGENTS.md tool list with MCP server (63 tools); fix 7 stale references in .agents/

.agents/skills/docs-lint/SKILL.md

@@ -20,6 +20,6 @@ Run from the repo root:
 Exit code is non-zero when any violation is found, so it can gate a commit. The banned-vocabulary
 list mirrors `writing-style.md`; update both together if the standard changes.
 
-> **Known baseline.** `archive/knowledge/archive/knowledge/containers/101-jellyfin.md` links into a sibling repo
+> **Known baseline.** `archive/knowledge/containers/101-jellyfin.md` links into a sibling repo
 > (`devops/homelab-authentik-admin`) that this checkout does not contain — expected, not a bug.
 > Any other broken link is a real regression; investigate before dismissing it as baseline noise.

.agents/skills/lifecycle-destroy-node/SKILL.md

@@ -36,8 +36,9 @@ ledger entry.
 6. Update the entity's `state` to `destroyed` in `seeds/inventory.yaml`
    (or move it to an `archaeology:`-style section if the schema still has
    one) — `pve_id`, `destroyed` date, `reason` — then `oikos seed` to
-   ingest. Add a row to `containers/index.md` "Recently destroyed" table
-   (kept for human-readable browsing alongside the structured data).
+ingest. Add a row to the legacy `archive/knowledge/containers/index.md`
+    "Recently destroyed" table (kept for human-readable browsing
+    alongside the structured data in the DB).
 7. No manual ledger step — mutations through the API are recorded
    automatically in the `audit_log` table (MCP `get_audit_trail`,
    `get_change_history`). The old `oikos/ledger.py append` was retired

.agents/skills/lifecycle-provision-node/SKILL.md

@@ -27,9 +27,10 @@ chosen, doc page stub.
    will self-enroll as a client afterward (see
    [CLIENTS.md](../../../CLIENTS.md#enrollment)), the entity must exist in
    `planned`/`provisioning` state before `bootstrap.sh` runs there.
-3. Stub the doc page (`containers/<pve_id>-<name>.md` or
-   `vms/<pve_id>-<name>.md`) — even a one-line "provisioning, see plan X"
-   is enough to satisfy the transition requirement.
+3. Stub a document entity via MCP `upsert_knowledge` with
+    `kind: document` and about set to the new entity slug — even a
+    one-line "provisioning, see plan X" is enough to satisfy the
+    transition requirement.
 4. Reserve the IP in DNS/DHCP notes if it's a fixed LAN address.
 
 Next: [lifecycle-activate-node.md](../lifecycle-activate-node/SKILL.md).

.agents/skills/session-review/SKILL.md

@@ -78,5 +78,5 @@ Session: {id[:8]} — "{title[:60]}"
 - `internal/mcp/server.go` — all tool implementations (`run`, `list_lxcs`, …)
 - `web/src/lib/components/ToolCallGroup.svelte` — tool result display
 - `nomos/SOUL.md` — agent persona and tool selection rules
-- `plans/2026-07-09-chat-sessions-improvements.md` — prior session findings
-- `plans/2026-07-09-session-execution-and-ux-fixes.md` — latest plan
+- `plans/done/2026-07-09-chat-sessions-improvements.md` — prior session findings
+- `plans/done/2026-07-09-session-execution-and-ux-fixes.md` — latest plan