docs: move narrative wiki under knowledge/wiki/ (phase 3)

Problem: node and cross-cutting narratives lived at the repo root
(containers/, vms/, infrastructure/, host .md files), interleaved with the
machine-readable substrate.

Change:
- Move containers/ -> knowledge/wiki/containers/, vms/ -> knowledge/wiki/vms/,
  infrastructure/ -> knowledge/wiki/infrastructure/, hosts/{hubris,strong}.md ->
  knowledge/wiki/hosts/, infrastructure/references/ -> knowledge/sources/references/,
  GLOSSARY.md -> knowledge/GLOSSARY.md.
- Add knowledge/{index.md,log.md,sources/index.md} scaffolding.
- Rewrite all relative links repo-wide via a path-resolving mapper (inbound +
  outbound + between-moved-files), including .hermes/, runbooks, operations,
  investigations, plans, README, AGENTS.
- Repoint inventory.yaml doc_page fields and regenerate hosts/*.yaml (which
  embed doc_page); update oikos/gen-topology.py output path, candidate doc
  paths, and footer links; update code-comment doc paths.

Substrate untouched in place: inventory.yaml, hosts/*.yaml (regenerated,
idempotent), oikos/ code, mcp/, secrets/, bin/.

Verification:
- Logical broken-link set identical to pre-move baseline (net 128 -> 127; the
  topology regen fixed one, introduced none). Remaining are pre-existing refs
  to destroyed/archived nodes, out of scope for this move.
- gen-topology.py --check exit 0 (in sync); cards carry knowledge/wiki/ doc paths.
- build_host_files.py idempotent; all inventory doc_page targets resolve.
- MCP contract verified: get_page/search_docs/get_changelog resolve moved pages.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>

operations/agent-enrollment.md

@@ -6,7 +6,7 @@ this repo that auto-syncs every 5 min, a per-client age key for SOPS
 decryption, the `homelab` CLI, and an MCP endpoint in Claude Code's config.
 
 > Onboarding a Nous-Hermes-powered Goose agent on top of standard enrollment?
-> See [hermes-agent.md](./hermes-agent.md). It uses the same `bootstrap.sh`
+> See [hermes-agent.md](hermes-agent.md). It uses the same `bootstrap.sh`
 > with an additional `--with-hermes` flag.
 
 Architecture in [project_homelab_context_plan](https://… memory link); the
@@ -40,7 +40,7 @@ Bootstrap auto-installs netbird and drives `netbird up` if the mesh isn't alread
 
 The new client runs bootstrap straight from a fresh OS. Bootstrap installs netbird (apt/dnf/brew based on the OS), then runs `netbird up --management-url https://netbird.hubris.network --ssh-jwt-cache-ttl 86400`. A device-code URL prints inline. The operator opens it (in a browser logged into Authentik), goes through identification → password → consent, and the CLI returns `Connected`. Bootstrap then proceeds with the rest of preflight.
 
-Pre-condition: the operator must be a registered user in Authentik (typically the lab owner). The first user-login against a netbird account with existing peers is added as `pending_approval=1` and needs an sqlite promotion to `owner` — see [124-authentik.md First-time owner promotion gotcha](../containers/124-authentik.md). Only needed once per account.
+Pre-condition: the operator must be a registered user in Authentik (typically the lab owner). The first user-login against a netbird account with existing peers is added as `pending_approval=1` and needs an sqlite promotion to `owner` — see [124-authentik.md First-time owner promotion gotcha](../knowledge/wiki/containers/124-authentik.md). Only needed once per account.
 
 **Path A — setup-key (headless/scripted onboarding):**
 
@@ -62,7 +62,7 @@ Useful for headless servers (no browser at all) or unattended cloud-init bootstr
 ### DNS prerequisite
 
 `*.hubris.network` resolves via the split-horizon dnsmasq on LXC 124
-([dns.md](../infrastructure/dns.md)) for LAN clients, **but only if the
+([dns.md](../knowledge/wiki/infrastructure/dns.md)) for LAN clients, **but only if the
 client uses 192.168.8.180 as its resolver**. Most LXCs and roaming
 workstations don't by default. Options:
 
@@ -342,7 +342,7 @@ The CLI prints a follow-up checklist that the operator must do manually:
 | `homelab` CLI doesn't pick up repo updates | Pre-`02db…` bootstrap copied the binary instead of symlinking | One-time migration: `sudo ln -sfn /opt/homelab-context/bin/homelab /usr/local/bin/homelab`. New bootstraps use the symlink, which auto-tracks the synced repo. |
 | `homelab-context-sync.service` journal shows `fatal: could not read Username for 'https://git.hubris.network'` | Pre-fix bootstrap set the gitea credential helper via `git config --global`, which writes to `/root/.gitconfig` — invisible to the systemd timer's git process (no HOME set). | One-time migration: `sudo git config --system credential.helper "store --file=/etc/homelab-context/git-credentials"`. New bootstraps store the helper in `/etc/gitconfig` instead. |
 | Chat-mode `!` shell can't `sudo` (`a terminal is required to read the password`) | Claude Code's `!` invocation doesn't allocate a tty, and standard `sudo` won't read its password from stdin or a non-tty pipe. | Run the sudo'd command in a real terminal outside chat. For commands the agent issues repeatedly, configure passwordless sudo for the narrow set (e.g. `/etc/sudoers.d/homelab-self` with `<user> ALL=(ALL) NOPASSWD: /usr/bin/dnf upgrade -y, /usr/bin/apt-get *`). |
-| `netbird status -d` reports `192.168.8.180:53 ... is Unavailable` but DNS actually works | netbird's UDP-53 probe times out over the relay latency (~90ms), but actual queries still flow through systemd-resolved. Cosmetic. | Ignore unless `dig @192.168.8.180 git.hubris.network` also fails — then check dnsmasq on [LXC 124](../containers/124-authentik.md). |
+| `netbird status -d` reports `192.168.8.180:53 ... is Unavailable` but DNS actually works | netbird's UDP-53 probe times out over the relay latency (~90ms), but actual queries still flow through systemd-resolved. Cosmetic. | Ignore unless `dig @192.168.8.180 git.hubris.network` also fails — then check dnsmasq on [LXC 124](../knowledge/wiki/containers/124-authentik.md). |
 | `netbird ssh` rejected with `JWT authentication failed: validate token (expected issuer=https://netbird.hubris.network/oauth2 ...)` | Peer's SSH JWT validator cached the OLD embedded-Dex issuer from before the 2026-05-21 Authentik migration. `systemctl restart netbird` and `netbird down/up` don't clear it — `client/internal/engine_ssh.go` bails out of `updateSSH()` if the SSH server is already running. | Full daemon bounce: `sudo systemctl stop netbird; sleep 3; sudo systemctl start netbird`. Verify with `grep -iE "issuer\|audience" /var/log/netbird/client.log \| tail`. Apply once per peer post-migration. |
 | `netbird ssh` JWT passes but session closes with `user privilege check failed: user dtoro not found: unknown user dtoro` | netbird-ssh defaults the remote username to the LOCAL one (operator's laptop user). Hubris and LXCs only have `root`. | Always use explicit `root@` prefix manually: `netbird ssh -p 22022 root@proxmox-server.netbird.selfhosted`. `homelab ssh <host>` does this automatically via `inventory.yaml`'s per-host `ssh.user` field (defaults to `root`). |
 | `homelab ssh hubris` (or any host on the LAN) fails with `Connection refused` or hangs, despite mesh routing being up | Off-LAN networks (operator on a VPN / coffee shop / symmetric NAT) sometimes can't reach the LAN IP even with the netbird subnet route. | Newer homelab CLIs probe the LAN with a 1.5s TCP connect and transparently fall back to the netbird FQDN. If your `/usr/local/bin/homelab` is a symlink to `/opt/homelab-context/bin/homelab` it'll pick up the fix on the next 5-min context sync. Otherwise pull the latest from gitea. |
@@ -356,7 +356,7 @@ and LAN IP registration. New workstations enrolled via this doc will
 automatically join the universal SSH mesh.
 
 ### 2026-05-31 — cross-link to hermes-agent.md
-Added a sibling page covering Nous-Hermes-on-Goose enrollment ([hermes-agent.md](./hermes-agent.md)) and noted it at the top of this page. The Hermes flow extends `bootstrap.sh` with `--with-hermes` and `homelab client add` with the same flag; it does not change the underlying enrollment steps documented here.
+Added a sibling page covering Nous-Hermes-on-Goose enrollment ([hermes-agent.md](hermes-agent.md)) and noted it at the top of this page. The Hermes flow extends `bootstrap.sh` with `--with-hermes` and `homelab client add` with the same flag; it does not change the underlying enrollment steps documented here.
 
 ### 2026-05-21 — netbird-ssh JWT issuer + username + LAN-fallback troubleshooting rows
 Added three rows to the troubleshooting table covering issues surfaced during the netbird vanilla migration: (1) post-migration SSH JWT validator cache stuck on old Dex issuer (full `systemctl stop/start` required, not `restart`), (2) `user not found` from netbird-ssh's local-username default (use explicit `root@`), and (3) homelab CLI's LAN→netbird-FQDN fallback for off-LAN operators. Companion code change: per-host `ssh.user` field in `inventory.yaml` + `homelab` CLI's `ssh_target()` helper.