cleanup: fix all stale references across .agents/ docs

- Rewrite AGENTS.md: DB as source of truth, MCP knowledge tools, archive refs
- Fix OIKOS.md: seeds/ paths, remove Python-era notes, update deployment status
- Fix commands.md, agent-enrollment.md: archive/knowledge/ links
- Fix all SKILL.md files: remove hosts/*.yaml refs, point to inventory.yaml
- Fix HERMES.md, schema.md, page-templates.md, llm-wiki.md: update paths
- Fix bootstrap.sh: identity check reads inventory.yaml
- Fix README.md, cutover-checklist.md: stale wiki references
- Move convert-wiki.py to archive/ (one-shot done)

.agents/skills/config-change-deploy/SKILL.md

@@ -15,13 +15,13 @@ own repo) and get it live, safely.
    `config_repo`, its risk class, and the verification command to run
    after. If risk class requires approval (`config_mutation` or
    `destructive`), stop and get operator sign-off before editing — see
-   `oikos/policy.yaml`.
+   `seeds/policy.yaml`.
 2. Clone/pull the `config_repo` (never edit the backend's working tree
    directly — tracked configs change by commit + push, per
    [OIKOS.md](../../OIKOS.md) conventions).
 3. Make the change, commit, push to `main`.
 4. The Gitea webhook fires the deploy pipeline for that repo (see
-   [infrastructure/auto-deploy.md](../../../knowledge/wiki/infrastructure/auto-deploy.md) for
+   [infrastructure/auto-deploy.md](../../../archive/knowledge/infrastructure/auto-deploy.md) for
    the exact receiver/reload for this service).
 5. Run the preflight's verification command. If it fails, check
    `homelab service <name> log` for the reload/restart error.