phase 1 review fixes: dedup edges, real export, validation, tests
Review of aa2ca0a found and fixed:
- re-ingest duplicated ALL edges (upsert conflicted on valid_from=now(),
never fired) — migration 007 dedupes + partial unique index on current
edges; upsert now targets it. Regression-tested.
- export was a stub that overwrote seeds/*.yaml with 11-byte "version: 1"
files — implemented real deterministic export (ontology/inventory/policy,
cognition-layer excluded); round-trip is byte-stable (tested)
- DB password leaked in startup logs (slog JSON bypasses String()) —
Config now implements slog.LogValuer; regression-tested
- docker-compose had literal '***' as DB password — env-interpolated
- uuid.New() (v4) → uuid.NewV7() per ADR-0005
- no ontology validation on ingest — internal/ontology TypeTree: abstract
instantiation rejected, relationship endpoints hierarchy-validated,
cardinality enforced in-transaction, lifecycle states checked, default
state applied (Phase 1 gate items, R3-1)
- getOrCreateEntityID swallowed non-ErrNoRows errors
- migration runner now holds a session advisory lock on one connection
- Makefile: hardcoded /opt/homebrew/bin/go → go; test-db target
Tests: 4 unit suites + 7 integration tests (env-guarded, throwaway DB per
run): migrate idempotent, seed idempotent + no dup edges, abstract/edge/
cardinality rejection, blast_radius cycle termination, export round-trip.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
This commit is contained in:
300
internal/db/export.go
Normal file
300
internal/db/export.go
Normal file
@@ -0,0 +1,300 @@
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package db
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import (
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"context"
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"encoding/json"
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"fmt"
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"gopkg.in/yaml.v3"
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)
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// ExportToYAML regenerates the three seed YAMLs from the DB (DR / version
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// control, plan D6). Output is deterministic: maps marshal with sorted keys
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// (yaml.v3 default for map[string]any) and lists are ordered by slug/name,
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// so export → ingest → export is byte-stable.
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//
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// Cognition-layer entities (signals, executions, patterns, …) are runtime
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// state, not inventory — they are excluded from the export.
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func ExportToYAML(ctx context.Context, pool *Pool) (map[string][]byte, error) {
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result := make(map[string][]byte)
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for name, fn := range map[string]func(context.Context, *Pool) (map[string]any, error){
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"ontology.yaml": exportOntology,
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"inventory.yaml": exportInventory,
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"policy.yaml": exportPolicy,
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} {
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doc, err := fn(ctx, pool)
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if err != nil {
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return nil, fmt.Errorf("export %s: %w", name, err)
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}
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out, err := yaml.Marshal(doc)
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if err != nil {
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return nil, fmt.Errorf("marshal %s: %w", name, err)
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}
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result[name] = out
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}
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return result, nil
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}
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func exportOntology(ctx context.Context, pool *Pool) (map[string]any, error) {
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lifecycles := map[string]any{}
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rows, err := pool.Query(ctx,
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`SELECT id, states, default_state, terminal_states, transitions
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FROM lifecycle_defs ORDER BY id`)
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if err != nil {
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return nil, err
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}
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for rows.Next() {
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var id, def string
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var states, terminal []string
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var transitionsJSON []byte
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if err := rows.Scan(&id, &states, &def, &terminal, &transitionsJSON); err != nil {
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rows.Close()
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return nil, err
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}
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var transitions map[string]any
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if err := json.Unmarshal(transitionsJSON, &transitions); err != nil {
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rows.Close()
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return nil, fmt.Errorf("lifecycle %s transitions: %w", id, err)
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}
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lifecycles[id] = map[string]any{
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"states": states,
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"default_state": def,
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"terminal_states": terminal,
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"transitions": transitions,
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}
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}
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rows.Close()
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if rows.Err() != nil {
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return nil, rows.Err()
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}
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entityTypes := map[string]any{}
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rows, err = pool.Query(ctx,
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`SELECT name, COALESCE(parent_type,''), is_abstract, domain, layer,
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COALESCE(description,''), COALESCE(lifecycle_id,''), attribute_schema
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FROM entity_types ORDER BY name`)
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if err != nil {
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return nil, err
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}
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for rows.Next() {
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var name, parent, dom, layer, desc, lc string
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var isAbstract bool
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var schemaJSON []byte
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if err := rows.Scan(&name, &parent, &isAbstract, &dom, &layer, &desc, &lc, &schemaJSON); err != nil {
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rows.Close()
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return nil, err
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}
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et := map[string]any{"domain": dom, "layer": layer}
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if parent != "" {
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et["parent"] = parent
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}
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if isAbstract {
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et["abstract"] = true
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}
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if desc != "" {
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et["description"] = desc
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}
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if lc != "" {
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et["lifecycle"] = lc
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}
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if len(schemaJSON) > 0 && string(schemaJSON) != "null" {
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var schema map[string]any
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if err := json.Unmarshal(schemaJSON, &schema); err == nil && schema != nil {
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et["attributes"] = schema
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}
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}
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entityTypes[name] = et
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}
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rows.Close()
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if rows.Err() != nil {
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return nil, rows.Err()
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}
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relTypes := map[string]any{}
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rows, err = pool.Query(ctx,
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`SELECT name, COALESCE(inverse,''), source_type, target_type, cardinality,
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COALESCE(description,'')
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FROM relationship_types ORDER BY name`)
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if err != nil {
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return nil, err
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}
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for rows.Next() {
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var name, inverse, src, tgt, card, desc string
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if err := rows.Scan(&name, &inverse, &src, &tgt, &card, &desc); err != nil {
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rows.Close()
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return nil, err
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}
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rt := map[string]any{"source": src, "target": tgt, "cardinality": card}
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if inverse != "" {
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rt["inverse"] = inverse
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}
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if desc != "" {
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rt["description"] = desc
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}
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relTypes[name] = rt
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}
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rows.Close()
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if rows.Err() != nil {
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return nil, rows.Err()
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}
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return map[string]any{
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"version": 1,
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"lifecycles": lifecycles,
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"entity_types": entityTypes,
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"relationship_types": relTypes,
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}, nil
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}
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func exportInventory(ctx context.Context, pool *Pool) (map[string]any, error) {
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var entities []any
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rows, err := pool.Query(ctx, `
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SELECT e.slug, e.type, e.name, COALESCE(e.state,''), e.attributes
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FROM entities e
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JOIN entity_types et ON et.name = e.type
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WHERE et.layer <> 'cognition'
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ORDER BY e.slug`)
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if err != nil {
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return nil, err
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}
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for rows.Next() {
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var slug, typ, name, state string
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var attrsJSON []byte
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if err := rows.Scan(&slug, &typ, &name, &state, &attrsJSON); err != nil {
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rows.Close()
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return nil, err
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}
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e := map[string]any{"slug": slug, "type": typ, "name": name}
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if state != "" {
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e["state"] = state
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}
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var attrs map[string]any
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if err := json.Unmarshal(attrsJSON, &attrs); err == nil && len(attrs) > 0 {
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e["attributes"] = attrs
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}
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entities = append(entities, e)
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}
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rows.Close()
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if rows.Err() != nil {
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return nil, rows.Err()
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}
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var rels []any
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rows, err = pool.Query(ctx, `
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SELECT se.slug, te.slug, r.type, r.attributes
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FROM relationships r
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JOIN entities se ON se.id = r.source_id
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JOIN entities te ON te.id = r.target_id
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WHERE r.valid_to IS NULL
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ORDER BY r.type, se.slug, te.slug`)
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if err != nil {
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return nil, err
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}
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for rows.Next() {
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var src, tgt, typ string
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var attrsJSON []byte
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if err := rows.Scan(&src, &tgt, &typ, &attrsJSON); err != nil {
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rows.Close()
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return nil, err
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}
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rel := map[string]any{"source": src, "target": tgt, "type": typ}
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var attrs map[string]any
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if len(attrsJSON) > 0 && json.Unmarshal(attrsJSON, &attrs) == nil && len(attrs) > 0 {
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rel["attributes"] = attrs
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}
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rels = append(rels, rel)
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}
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rows.Close()
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if rows.Err() != nil {
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return nil, rows.Err()
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}
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return map[string]any{
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"version": 1,
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"entities": entities,
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"relationships": rels,
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}, nil
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}
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func exportPolicy(ctx context.Context, pool *Pool) (map[string]any, error) {
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riskClasses := map[string]any{}
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rows, err := pool.Query(ctx,
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`SELECT name, COALESCE(description,''), approval_required, autonomy_allowed
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FROM risk_classes ORDER BY name`)
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if err != nil {
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return nil, err
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}
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for rows.Next() {
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var name, desc, approval string
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var autonomy bool
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if err := rows.Scan(&name, &desc, &approval, &autonomy); err != nil {
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rows.Close()
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return nil, err
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}
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rc := map[string]any{"approval_required": approval, "autonomy_allowed": autonomy}
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if desc != "" {
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rc["description"] = desc
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}
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riskClasses[name] = rc
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}
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rows.Close()
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if rows.Err() != nil {
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return nil, rows.Err()
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}
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var rules []any
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rows, err = pool.Query(ctx, `
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SELECT COALESCE(ar.entity_type,''), ar.action, ar.risk_class,
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ar.autonomy_level, COALESCE(se.slug,'')
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FROM approval_rules ar
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LEFT JOIN entities se ON se.id = ar.scope_entity
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ORDER BY COALESCE(ar.entity_type,''), ar.action, COALESCE(se.slug,'')`)
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if err != nil {
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return nil, err
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}
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for rows.Next() {
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var et, action, rc, al, scope string
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if err := rows.Scan(&et, &action, &rc, &al, &scope); err != nil {
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rows.Close()
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return nil, err
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}
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rule := map[string]any{"action": action, "risk_class": rc, "autonomy_level": al}
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if et != "" {
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rule["entity_type"] = et
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}
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if scope != "" {
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rule["scope_entity"] = scope
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}
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rules = append(rules, rule)
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}
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rows.Close()
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if rows.Err() != nil {
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return nil, rows.Err()
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}
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settings := map[string]any{}
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rows, err = pool.Query(ctx, `SELECT key, value FROM autonomy_settings ORDER BY key`)
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if err != nil {
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return nil, err
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}
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for rows.Next() {
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var k, v string
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if err := rows.Scan(&k, &v); err != nil {
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rows.Close()
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return nil, err
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}
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settings[k] = v
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}
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rows.Close()
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if rows.Err() != nil {
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return nil, rows.Err()
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}
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return map[string]any{
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"version": 1,
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"risk_classes": riskClasses,
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"approval_rules": rules,
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"autonomy_settings": settings,
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}, nil
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}
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338
internal/db/integration_test.go
Normal file
338
internal/db/integration_test.go
Normal file
@@ -0,0 +1,338 @@
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package db
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// Integration tests against a real TimescaleDB. Guarded by
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// OIKOS_TEST_DATABASE_URL — skipped when unset. Run with:
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//
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// docker compose up -d postgres
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// OIKOS_TEST_DATABASE_URL="postgres://oikos:oikos_dev@localhost:5432/oikos?sslmode=disable" go test ./internal/db/
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//
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// or `make test-db`. Each run creates a throwaway database and drops it.
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import (
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"bytes"
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"context"
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"errors"
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"fmt"
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"math/rand"
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"os"
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"strings"
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"testing"
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"github.com/dtoro/oikos/internal/domain"
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"github.com/jackc/pgx/v5"
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"gopkg.in/yaml.v3"
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)
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func seedsDir() string { return "../../seeds" }
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// newTestPool creates a throwaway database (dropped on cleanup), runs all
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// migrations, and returns a pool connected to it.
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func newTestPool(t *testing.T) *Pool {
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t.Helper()
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baseURL := os.Getenv("OIKOS_TEST_DATABASE_URL")
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if baseURL == "" {
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t.Skip("OIKOS_TEST_DATABASE_URL not set — skipping integration test")
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}
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ctx := context.Background()
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admin, err := pgx.Connect(ctx, baseURL)
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if err != nil {
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t.Fatalf("connect admin: %v", err)
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}
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dbName := fmt.Sprintf("oikos_test_%08x", rand.Int63())
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if _, err := admin.Exec(ctx, "CREATE DATABASE "+dbName); err != nil {
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admin.Close(ctx)
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t.Fatalf("create test db: %v", err)
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}
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admin.Close(ctx)
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testURL := swapDatabase(baseURL, dbName)
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pool, err := New(ctx, testURL)
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if err != nil {
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t.Fatalf("connect test db: %v", err)
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}
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t.Cleanup(func() {
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pool.Close()
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admin, err := pgx.Connect(ctx, baseURL)
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if err == nil {
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admin.Exec(ctx, "DROP DATABASE IF EXISTS "+dbName+" WITH (FORCE)")
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admin.Close(ctx)
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}
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})
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if err := pool.Migrate(ctx); err != nil {
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t.Fatalf("migrate: %v", err)
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}
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return pool
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}
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// swapDatabase replaces the database name in a postgres URL.
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func swapDatabase(url, db string) string {
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// postgres://user:pass@host:port/dbname?params
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qi := strings.Index(url, "?")
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params := ""
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base := url
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if qi >= 0 {
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base, params = url[:qi], url[qi:]
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}
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si := strings.LastIndex(base, "/")
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return base[:si+1] + db + params
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}
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func seedAll(t *testing.T, pool *Pool, dir string) {
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t.Helper()
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for _, f := range []string{"ontology.yaml", "inventory.yaml", "policy.yaml"} {
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content, err := os.ReadFile(dir + "/" + f)
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if err != nil {
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t.Fatalf("read %s: %v", f, err)
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}
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ingestSeedContent(t, pool, f, content)
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}
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}
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func ingestSeedContent(t *testing.T, pool *Pool, name string, content []byte) {
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t.Helper()
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ctx := context.Background()
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err := pool.SeedIngest(ctx, name, content,
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func(ctx context.Context, tx pgx.Tx, data map[string]any) error {
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var err error
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switch name {
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case "ontology.yaml":
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_, err = IngestOntologySeed(ctx, tx, data)
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case "inventory.yaml":
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_, err = IngestInventorySeed(ctx, tx, data)
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case "policy.yaml":
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_, err = IngestPolicySeed(ctx, tx, data)
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}
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return err
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})
|
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if err != nil {
|
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t.Fatalf("ingest %s: %v", name, err)
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}
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}
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func count(t *testing.T, pool *Pool, query string) int {
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t.Helper()
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var n int
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if err := pool.QueryRow(context.Background(), query).Scan(&n); err != nil {
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t.Fatalf("count %q: %v", query, err)
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}
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return n
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}
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|
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func TestMigrateIdempotent(t *testing.T) {
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pool := newTestPool(t)
|
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// second run must be a clean no-op
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if err := pool.Migrate(context.Background()); err != nil {
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t.Fatalf("second migrate: %v", err)
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}
|
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}
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|
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func TestSeedIngestIdempotentAndNoDuplicateEdges(t *testing.T) {
|
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pool := newTestPool(t)
|
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seedAll(t, pool, seedsDir())
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|
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entities := count(t, pool, "SELECT count(*) FROM entities")
|
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edges := count(t, pool, "SELECT count(*) FROM relationships WHERE valid_to IS NULL")
|
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if entities == 0 || edges == 0 {
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t.Fatalf("seed produced empty graph: %d entities, %d edges", entities, edges)
|
||||
}
|
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|
||||
// Same content → hash no-op
|
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seedAll(t, pool, seedsDir())
|
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if got := count(t, pool, "SELECT count(*) FROM relationships WHERE valid_to IS NULL"); got != edges {
|
||||
t.Errorf("unchanged re-seed altered edges: %d → %d", edges, got)
|
||||
}
|
||||
|
||||
// Changed content (hash differs) → full re-ingest must NOT duplicate edges
|
||||
// (regression: the old upsert conflicted on valid_from and duplicated all
|
||||
// 144 edges on every re-ingest)
|
||||
content, err := os.ReadFile(seedsDir() + "/inventory.yaml")
|
||||
if err != nil {
|
||||
t.Fatal(err)
|
||||
}
|
||||
touched := append(content, []byte("\n# touched for hash change\n")...)
|
||||
ingestSeedContent(t, pool, "inventory.yaml", touched)
|
||||
|
||||
if got := count(t, pool, "SELECT count(*) FROM relationships WHERE valid_to IS NULL"); got != edges {
|
||||
t.Errorf("touched re-seed duplicated edges: %d → %d", edges, got)
|
||||
}
|
||||
if dup := count(t, pool, `SELECT count(*) FROM (
|
||||
SELECT source_id, target_id, type FROM relationships
|
||||
WHERE valid_to IS NULL GROUP BY 1,2,3 HAVING count(*) > 1) d`); dup != 0 {
|
||||
t.Errorf("%d duplicated current edges", dup)
|
||||
}
|
||||
if got := count(t, pool, "SELECT count(*) FROM entities"); got != entities {
|
||||
t.Errorf("touched re-seed altered entity count: %d → %d", entities, got)
|
||||
}
|
||||
}
|
||||
|
||||
func TestAbstractTypeRejected(t *testing.T) {
|
||||
pool := newTestPool(t)
|
||||
seedAll(t, pool, seedsDir())
|
||||
|
||||
bad := []byte(`
|
||||
version: 1
|
||||
entities:
|
||||
- {slug: "machine:ghost", type: machine, name: ghost}
|
||||
`)
|
||||
ctx := context.Background()
|
||||
err := pool.SeedIngest(ctx, "inventory.yaml", bad,
|
||||
func(ctx context.Context, tx pgx.Tx, data map[string]any) error {
|
||||
_, err := IngestInventorySeed(ctx, tx, data)
|
||||
return err
|
||||
})
|
||||
if !errors.Is(err, domain.ErrAbstractType) {
|
||||
t.Errorf("abstract instantiation = %v, want ErrAbstractType", err)
|
||||
}
|
||||
}
|
||||
|
||||
func TestEdgeEndpointValidation(t *testing.T) {
|
||||
pool := newTestPool(t)
|
||||
seedAll(t, pool, seedsDir())
|
||||
|
||||
// routes-to requires source ingress-route; a service source must fail
|
||||
bad := []byte(`
|
||||
version: 1
|
||||
relationships:
|
||||
- {source: "service:gitea", target: "service:caddy", type: routes-to}
|
||||
`)
|
||||
ctx := context.Background()
|
||||
err := pool.SeedIngest(ctx, "inventory.yaml", bad,
|
||||
func(ctx context.Context, tx pgx.Tx, data map[string]any) error {
|
||||
_, err := IngestInventorySeed(ctx, tx, data)
|
||||
return err
|
||||
})
|
||||
if !errors.Is(err, domain.ErrInvalidEdge) {
|
||||
t.Errorf("bad edge = %v, want ErrInvalidEdge", err)
|
||||
}
|
||||
|
||||
// hosts from a proxmox-host (is-a machine) to an lxc (is-a compute-entity)
|
||||
// must PASS via hierarchy walk — already covered by the seed itself, but
|
||||
// assert an explicit one for clarity
|
||||
good := []byte(`
|
||||
version: 1
|
||||
relationships:
|
||||
- {source: "host:strong", target: "lxc:jellyfin", type: hosts}
|
||||
`)
|
||||
err = pool.SeedIngest(ctx, "inventory.yaml", good,
|
||||
func(ctx context.Context, tx pgx.Tx, data map[string]any) error {
|
||||
_, err := IngestInventorySeed(ctx, tx, data)
|
||||
return err
|
||||
})
|
||||
if err != nil {
|
||||
t.Errorf("valid inherited edge rejected: %v", err)
|
||||
}
|
||||
}
|
||||
|
||||
func TestCardinalityEnforced(t *testing.T) {
|
||||
pool := newTestPool(t)
|
||||
seedAll(t, pool, seedsDir())
|
||||
|
||||
// routes-to is many-to-one: one ingress route cannot point at two services
|
||||
bad := []byte(`
|
||||
version: 1
|
||||
relationships:
|
||||
- {source: "ingress:git.hubris.network", target: "service:jellyfin", type: routes-to}
|
||||
`)
|
||||
ctx := context.Background()
|
||||
err := pool.SeedIngest(ctx, "inventory.yaml", bad,
|
||||
func(ctx context.Context, tx pgx.Tx, data map[string]any) error {
|
||||
_, err := IngestInventorySeed(ctx, tx, data)
|
||||
return err
|
||||
})
|
||||
if err == nil || !strings.Contains(err.Error(), "cardinality") {
|
||||
t.Errorf("cardinality violation = %v, want cardinality error", err)
|
||||
}
|
||||
}
|
||||
|
||||
func TestBlastRadiusTerminatesOnCycles(t *testing.T) {
|
||||
pool := newTestPool(t)
|
||||
seedAll(t, pool, seedsDir())
|
||||
|
||||
// Build a dependency cycle: gitea → caddy → authentik → gitea
|
||||
cycle := []byte(`
|
||||
version: 1
|
||||
relationships:
|
||||
- {source: "service:gitea", target: "service:caddy", type: depends-on}
|
||||
- {source: "service:caddy", target: "service:authentik", type: depends-on}
|
||||
- {source: "service:authentik", target: "service:gitea", type: depends-on}
|
||||
`)
|
||||
ctx := context.Background()
|
||||
err := pool.SeedIngest(ctx, "inventory.yaml", cycle,
|
||||
func(ctx context.Context, tx pgx.Tx, data map[string]any) error {
|
||||
_, err := IngestInventorySeed(ctx, tx, data)
|
||||
return err
|
||||
})
|
||||
if err != nil {
|
||||
t.Fatalf("cycle ingest: %v", err)
|
||||
}
|
||||
|
||||
rows, err := pool.Query(ctx, `
|
||||
SELECT e.slug, b.depth
|
||||
FROM blast_radius((SELECT id FROM entities WHERE slug='service:gitea'), 5,
|
||||
ARRAY['depends-on']) b
|
||||
JOIN entities e ON e.id = b.entity_id ORDER BY b.depth`)
|
||||
if err != nil {
|
||||
t.Fatalf("blast_radius: %v", err)
|
||||
}
|
||||
defer rows.Close()
|
||||
got := map[string]int{}
|
||||
for rows.Next() {
|
||||
var slug string
|
||||
var depth int
|
||||
if err := rows.Scan(&slug, &depth); err != nil {
|
||||
t.Fatal(err)
|
||||
}
|
||||
got[slug] = depth
|
||||
}
|
||||
want := map[string]int{"service:gitea": 0, "service:caddy": 1, "service:authentik": 2}
|
||||
for slug, depth := range want {
|
||||
if got[slug] != depth {
|
||||
t.Errorf("blast_radius[%s] = %d, want %d (full: %v)", slug, got[slug], depth, got)
|
||||
}
|
||||
}
|
||||
if len(got) != len(want) {
|
||||
t.Errorf("blast_radius returned %d nodes, want %d: %v", len(got), len(want), got)
|
||||
}
|
||||
}
|
||||
|
||||
// TestExportRoundTripStable: export → ingest into a fresh DB → export again
|
||||
// must yield byte-identical YAML (the canonical-form fixpoint, plan D6).
|
||||
func TestExportRoundTripStable(t *testing.T) {
|
||||
pool := newTestPool(t)
|
||||
seedAll(t, pool, seedsDir())
|
||||
ctx := context.Background()
|
||||
|
||||
export1, err := ExportToYAML(ctx, pool)
|
||||
if err != nil {
|
||||
t.Fatalf("export 1: %v", err)
|
||||
}
|
||||
for name, content := range export1 {
|
||||
var doc map[string]any
|
||||
if err := yaml.Unmarshal(content, &doc); err != nil {
|
||||
t.Fatalf("export %s is not valid YAML: %v", name, err)
|
||||
}
|
||||
}
|
||||
|
||||
pool2 := newTestPool(t)
|
||||
for _, name := range []string{"ontology.yaml", "inventory.yaml", "policy.yaml"} {
|
||||
ingestSeedContent(t, pool2, name, export1[name])
|
||||
}
|
||||
export2, err := ExportToYAML(ctx, pool2)
|
||||
if err != nil {
|
||||
t.Fatalf("export 2: %v", err)
|
||||
}
|
||||
for _, name := range []string{"ontology.yaml", "inventory.yaml", "policy.yaml"} {
|
||||
if !bytes.Equal(export1[name], export2[name]) {
|
||||
t.Errorf("%s round-trip not byte-stable (len %d vs %d)",
|
||||
name, len(export1[name]), len(export2[name]))
|
||||
}
|
||||
}
|
||||
|
||||
// sanity: exported inventory carries the real graph, not a stub
|
||||
// (regression: export used to write 11-byte "version: 1" stubs)
|
||||
if len(export1["inventory.yaml"]) < 1000 {
|
||||
t.Errorf("inventory export suspiciously small: %d bytes", len(export1["inventory.yaml"]))
|
||||
}
|
||||
}
|
||||
@@ -39,11 +39,27 @@ func New(ctx context.Context, databaseURL string) (*Pool, error) {
|
||||
return &Pool{pool}, nil
|
||||
}
|
||||
|
||||
// migrationLockKey is the advisory-lock key serializing migration runs —
|
||||
// two concurrent `oikos migrate` invocations must not interleave DDL.
|
||||
const migrationLockKey = 0x01c05e5
|
||||
|
||||
// Migrate runs all embedded forward migrations in order.
|
||||
// Uses a schema_migrations table to track applied versions.
|
||||
// Uses a schema_migrations table to track applied versions. The whole run
|
||||
// happens on one connection holding a session advisory lock.
|
||||
func (p *Pool) Migrate(ctx context.Context) error {
|
||||
conn, err := p.Acquire(ctx)
|
||||
if err != nil {
|
||||
return fmt.Errorf("acquire migration conn: %w", err)
|
||||
}
|
||||
defer conn.Release()
|
||||
|
||||
if _, err := conn.Exec(ctx, "SELECT pg_advisory_lock($1)", migrationLockKey); err != nil {
|
||||
return fmt.Errorf("acquire migration lock: %w", err)
|
||||
}
|
||||
defer conn.Exec(context.WithoutCancel(ctx), "SELECT pg_advisory_unlock($1)", migrationLockKey)
|
||||
|
||||
// Create tracking table if not exists
|
||||
_, err := p.Exec(ctx, `
|
||||
_, err = conn.Exec(ctx, `
|
||||
CREATE TABLE IF NOT EXISTS schema_migrations (
|
||||
version INT PRIMARY KEY,
|
||||
applied_at TIMESTAMPTZ NOT NULL DEFAULT now()
|
||||
@@ -76,7 +92,7 @@ func (p *Pool) Migrate(ctx context.Context) error {
|
||||
|
||||
// Check if already applied
|
||||
var applied int
|
||||
err := p.QueryRow(ctx,
|
||||
err := conn.QueryRow(ctx,
|
||||
"SELECT COUNT(*) FROM schema_migrations WHERE version = $1", version).Scan(&applied)
|
||||
if err != nil {
|
||||
return fmt.Errorf("check migration %d: %w", version, err)
|
||||
@@ -99,12 +115,12 @@ func (p *Pool) Migrate(ctx context.Context) error {
|
||||
if stmt == "" {
|
||||
continue
|
||||
}
|
||||
_, err := p.Exec(ctx, stmt)
|
||||
_, err := conn.Exec(ctx, stmt)
|
||||
if err != nil {
|
||||
return fmt.Errorf("exec migration %s stmt %d: %w", fname, i+1, err)
|
||||
}
|
||||
}
|
||||
_, err = p.Exec(ctx, "INSERT INTO schema_migrations (version) VALUES ($1)", version)
|
||||
_, err = conn.Exec(ctx, "INSERT INTO schema_migrations (version) VALUES ($1)", version)
|
||||
if err != nil {
|
||||
return fmt.Errorf("record migration %d: %w", version, err)
|
||||
}
|
||||
|
||||
@@ -3,13 +3,11 @@ package db
|
||||
import (
|
||||
"context"
|
||||
"encoding/json"
|
||||
"errors"
|
||||
"fmt"
|
||||
"time"
|
||||
|
||||
"github.com/dtoro/oikos/internal/domain"
|
||||
"github.com/google/uuid"
|
||||
"github.com/jackc/pgx/v5"
|
||||
"gopkg.in/yaml.v3"
|
||||
)
|
||||
|
||||
// SeedResult holds counts from a seed ingest operation.
|
||||
@@ -83,11 +81,20 @@ func IngestOntologySeed(ctx context.Context, tx pgx.Tx, data map[string]any) (*S
|
||||
}
|
||||
|
||||
// IngestInventorySeed ingests seeds/inventory.yaml into the DB.
|
||||
// Every entity and edge is validated against the ontology (abstract types
|
||||
// rejected, lifecycle states checked, relationship endpoints hierarchy-
|
||||
// validated, cardinality enforced) — a violating seed rolls back atomically.
|
||||
func IngestInventorySeed(ctx context.Context, tx pgx.Tx, data map[string]any) (*SeedResult, error) {
|
||||
r := &SeedResult{}
|
||||
|
||||
tree, err := LoadTypeTree(ctx, tx)
|
||||
if err != nil {
|
||||
return nil, fmt.Errorf("load type tree: %w", err)
|
||||
}
|
||||
|
||||
// Entities
|
||||
entities, _ := data["entities"].([]any)
|
||||
entityTypes := make(map[string]string) // slug -> type, for edge validation
|
||||
for _, raw := range entities {
|
||||
eMap, ok := raw.(map[string]any)
|
||||
if !ok {
|
||||
@@ -99,7 +106,14 @@ func IngestInventorySeed(ctx context.Context, tx pgx.Tx, data map[string]any) (*
|
||||
state, _ := eMap["state"].(string)
|
||||
attrs := eMap["attributes"]
|
||||
|
||||
// Generate UUIDv7 for new entities, or find existing by slug
|
||||
if err := tree.ValidateEntity(typeName, state); err != nil {
|
||||
return nil, fmt.Errorf("entity %s: %w", slug, err)
|
||||
}
|
||||
if state == "" {
|
||||
state = tree.DefaultState(typeName)
|
||||
}
|
||||
entityTypes[slug] = typeName
|
||||
|
||||
entityID, err := getOrCreateEntityID(ctx, tx, slug)
|
||||
if err != nil {
|
||||
return nil, fmt.Errorf("entity %s: %w", slug, err)
|
||||
@@ -118,7 +132,8 @@ func IngestInventorySeed(ctx context.Context, tx pgx.Tx, data map[string]any) (*
|
||||
r.Entities++
|
||||
}
|
||||
|
||||
// Relationships
|
||||
// Relationships — upsert against the current-edge partial unique index
|
||||
// (migration 007) so re-ingest never duplicates edges.
|
||||
rels, _ := data["relationships"].([]any)
|
||||
for _, raw := range rels {
|
||||
relMap, ok := raw.(map[string]any)
|
||||
@@ -139,12 +154,32 @@ func IngestInventorySeed(ctx context.Context, tx pgx.Tx, data map[string]any) (*
|
||||
return nil, fmt.Errorf("rel to %s: %w", target, err)
|
||||
}
|
||||
|
||||
srcType := entityTypes[source]
|
||||
tgtType := entityTypes[target]
|
||||
if srcType == "" || tgtType == "" { // entity pre-existing in DB, not in this seed
|
||||
if srcType == "" {
|
||||
srcType, err = getEntityTypeBySlug(ctx, tx, source)
|
||||
if err != nil {
|
||||
return nil, err
|
||||
}
|
||||
}
|
||||
if tgtType == "" {
|
||||
tgtType, err = getEntityTypeBySlug(ctx, tx, target)
|
||||
if err != nil {
|
||||
return nil, err
|
||||
}
|
||||
}
|
||||
}
|
||||
if err := tree.ValidateEdge(relType, srcType, tgtType); err != nil {
|
||||
return nil, fmt.Errorf("rel %s→%s: %w", source, target, err)
|
||||
}
|
||||
|
||||
attrsBytes, _ := json.Marshal(attrs)
|
||||
_, err = tx.Exec(ctx,
|
||||
`INSERT INTO relationships (source_id, target_id, type, attributes, valid_from, valid_to)
|
||||
VALUES ($1, $2, $3, $4, now(), NULL)
|
||||
ON CONFLICT (source_id, target_id, type, valid_from)
|
||||
DO UPDATE SET attributes = $4`,
|
||||
ON CONFLICT (source_id, target_id, type) WHERE valid_to IS NULL
|
||||
DO UPDATE SET attributes = EXCLUDED.attributes`,
|
||||
sourceID, targetID, relType, string(attrsBytes))
|
||||
if err != nil {
|
||||
return nil, fmt.Errorf("rel %s→%s %s: %w", source, target, relType, err)
|
||||
@@ -152,6 +187,10 @@ func IngestInventorySeed(ctx context.Context, tx pgx.Tx, data map[string]any) (*
|
||||
r.Relationships++
|
||||
}
|
||||
|
||||
if err := ValidateCardinality(ctx, tx); err != nil {
|
||||
return nil, err
|
||||
}
|
||||
|
||||
return r, nil
|
||||
}
|
||||
|
||||
@@ -231,15 +270,29 @@ func IngestPolicySeed(ctx context.Context, tx pgx.Tx, data map[string]any) (*See
|
||||
|
||||
// --- Helpers ---
|
||||
|
||||
// getOrCreateEntityID returns the UUID for a slug, generating a new UUIDv7 if not found.
|
||||
// getOrCreateEntityID returns the UUID for a slug, generating a new
|
||||
// time-ordered UUIDv7 if the slug doesn't exist yet (ADR-0005).
|
||||
func getOrCreateEntityID(ctx context.Context, tx pgx.Tx, slug string) (uuid.UUID, error) {
|
||||
var id uuid.UUID
|
||||
err := tx.QueryRow(ctx, "SELECT id FROM entities WHERE slug = $1", slug).Scan(&id)
|
||||
if err == nil {
|
||||
switch {
|
||||
case err == nil:
|
||||
return id, nil
|
||||
case errors.Is(err, pgx.ErrNoRows):
|
||||
return uuid.NewV7()
|
||||
default:
|
||||
return uuid.Nil, fmt.Errorf("lookup slug %s: %w", slug, err)
|
||||
}
|
||||
// Generate a time-ordered UUID (using uuid.New for now; UUIDv7 in production)
|
||||
return uuid.New(), nil
|
||||
}
|
||||
|
||||
// getEntityTypeBySlug resolves a slug to its entity type name.
|
||||
func getEntityTypeBySlug(ctx context.Context, tx pgx.Tx, slug string) (string, error) {
|
||||
var t string
|
||||
err := tx.QueryRow(ctx, "SELECT type FROM entities WHERE slug = $1", slug).Scan(&t)
|
||||
if err != nil {
|
||||
return "", fmt.Errorf("resolve type of %s: %w", slug, err)
|
||||
}
|
||||
return t, nil
|
||||
}
|
||||
|
||||
// getEntityIDBySlug resolves a slug to its UUID.
|
||||
@@ -338,49 +391,3 @@ func keysOf(m map[string]map[string]any) []string {
|
||||
return keys
|
||||
}
|
||||
|
||||
// ExportToYAML regenerates the three seed YAMLs from the DB (for DR / version control, D6).
|
||||
func ExportToYAML(ctx context.Context, pool *Pool) (map[string][]byte, error) {
|
||||
result := make(map[string][]byte)
|
||||
|
||||
// Export ontology
|
||||
onto, err := exportOntology(ctx, pool)
|
||||
if err != nil {
|
||||
return nil, fmt.Errorf("export ontology: %w", err)
|
||||
}
|
||||
result["ontology.yaml"], _ = yaml.Marshal(onto)
|
||||
|
||||
// Export inventory
|
||||
inv, err := exportInventory(ctx, pool)
|
||||
if err != nil {
|
||||
return nil, fmt.Errorf("export inventory: %w", err)
|
||||
}
|
||||
result["inventory.yaml"], _ = yaml.Marshal(inv)
|
||||
|
||||
// Export policy
|
||||
pol, err := exportPolicy(ctx, pool)
|
||||
if err != nil {
|
||||
return nil, fmt.Errorf("export policy: %w", err)
|
||||
}
|
||||
result["policy.yaml"], _ = yaml.Marshal(pol)
|
||||
|
||||
return result, nil
|
||||
}
|
||||
|
||||
func exportOntology(ctx context.Context, pool *Pool) (map[string]any, error) {
|
||||
// TODO: implement full export from DB
|
||||
return map[string]any{"version": 1}, nil
|
||||
}
|
||||
|
||||
func exportInventory(ctx context.Context, pool *Pool) (map[string]any, error) {
|
||||
// TODO: implement full export from DB
|
||||
return map[string]any{"version": 1}, nil
|
||||
}
|
||||
|
||||
func exportPolicy(ctx context.Context, pool *Pool) (map[string]any, error) {
|
||||
// TODO: implement full export from DB
|
||||
return map[string]any{"version": 1}, nil
|
||||
}
|
||||
|
||||
// Unused import suppression for domain (will be needed when we add more logic)
|
||||
var _ = domain.Entity{}
|
||||
var _ = time.Now
|
||||
|
||||
53
internal/db/splitsql_test.go
Normal file
53
internal/db/splitsql_test.go
Normal file
@@ -0,0 +1,53 @@
|
||||
package db
|
||||
|
||||
import (
|
||||
"strings"
|
||||
"testing"
|
||||
)
|
||||
|
||||
func nonEmpty(stmts []string) []string {
|
||||
var out []string
|
||||
for _, s := range stmts {
|
||||
if strings.TrimSpace(s) != "" {
|
||||
out = append(out, s)
|
||||
}
|
||||
}
|
||||
return out
|
||||
}
|
||||
|
||||
func TestSplitSQLBasic(t *testing.T) {
|
||||
stmts := nonEmpty(splitSQL("CREATE TABLE a (id int); CREATE TABLE b (id int);"))
|
||||
if len(stmts) != 2 {
|
||||
t.Fatalf("got %d statements, want 2: %#v", len(stmts), stmts)
|
||||
}
|
||||
}
|
||||
|
||||
func TestSplitSQLDollarQuotedFunction(t *testing.T) {
|
||||
sql := `CREATE FUNCTION f() RETURNS int AS $$
|
||||
SELECT 1; SELECT 2;
|
||||
$$ LANGUAGE sql;
|
||||
CREATE TABLE t (id int);`
|
||||
stmts := nonEmpty(splitSQL(sql))
|
||||
if len(stmts) != 2 {
|
||||
t.Fatalf("got %d statements, want 2: %#v", len(stmts), stmts)
|
||||
}
|
||||
if !strings.Contains(stmts[0], "SELECT 1; SELECT 2;") {
|
||||
t.Errorf("dollar-quoted body was split: %q", stmts[0])
|
||||
}
|
||||
}
|
||||
|
||||
func TestSplitSQLTaggedDollarQuote(t *testing.T) {
|
||||
sql := `DO $body$ BEGIN PERFORM 1; END $body$;SELECT 1;`
|
||||
stmts := nonEmpty(splitSQL(sql))
|
||||
if len(stmts) != 2 {
|
||||
t.Fatalf("got %d statements, want 2: %#v", len(stmts), stmts)
|
||||
}
|
||||
}
|
||||
|
||||
func TestSplitSQLSemicolonInComment(t *testing.T) {
|
||||
sql := "-- comment with ; semicolon\nCREATE TABLE t (id int); -- trailing; note\nSELECT 1;"
|
||||
stmts := nonEmpty(splitSQL(sql))
|
||||
if len(stmts) != 2 {
|
||||
t.Fatalf("got %d statements, want 2: %#v", len(stmts), stmts)
|
||||
}
|
||||
}
|
||||
143
internal/db/typetree.go
Normal file
143
internal/db/typetree.go
Normal file
@@ -0,0 +1,143 @@
|
||||
package db
|
||||
|
||||
import (
|
||||
"context"
|
||||
"fmt"
|
||||
|
||||
"github.com/dtoro/oikos/internal/ontology"
|
||||
"github.com/jackc/pgx/v5"
|
||||
)
|
||||
|
||||
// LoadTypeTree loads the ontology meta-schema from the DB for validation.
|
||||
// Called within the same transaction as an ingest so it sees just-ingested
|
||||
// types.
|
||||
func LoadTypeTree(ctx context.Context, tx pgx.Tx) (*ontology.TypeTree, error) {
|
||||
t := &ontology.TypeTree{
|
||||
Types: map[string]ontology.TypeInfo{},
|
||||
RelTypes: map[string]ontology.RelTypeInfo{},
|
||||
Lifecycles: map[string]ontology.LifecycleInfo{},
|
||||
}
|
||||
|
||||
rows, err := tx.Query(ctx,
|
||||
`SELECT name, COALESCE(parent_type,''), is_abstract, COALESCE(lifecycle_id,'')
|
||||
FROM entity_types`)
|
||||
if err != nil {
|
||||
return nil, fmt.Errorf("load entity_types: %w", err)
|
||||
}
|
||||
for rows.Next() {
|
||||
var name string
|
||||
var info ontology.TypeInfo
|
||||
if err := rows.Scan(&name, &info.Parent, &info.IsAbstract, &info.LifecycleID); err != nil {
|
||||
rows.Close()
|
||||
return nil, err
|
||||
}
|
||||
t.Types[name] = info
|
||||
}
|
||||
rows.Close()
|
||||
if rows.Err() != nil {
|
||||
return nil, rows.Err()
|
||||
}
|
||||
|
||||
rows, err = tx.Query(ctx,
|
||||
`SELECT name, source_type, target_type, cardinality FROM relationship_types`)
|
||||
if err != nil {
|
||||
return nil, fmt.Errorf("load relationship_types: %w", err)
|
||||
}
|
||||
for rows.Next() {
|
||||
var name string
|
||||
var info ontology.RelTypeInfo
|
||||
if err := rows.Scan(&name, &info.SourceType, &info.TargetType, &info.Cardinality); err != nil {
|
||||
rows.Close()
|
||||
return nil, err
|
||||
}
|
||||
t.RelTypes[name] = info
|
||||
}
|
||||
rows.Close()
|
||||
if rows.Err() != nil {
|
||||
return nil, rows.Err()
|
||||
}
|
||||
|
||||
rows, err = tx.Query(ctx,
|
||||
`SELECT id, states, default_state FROM lifecycle_defs`)
|
||||
if err != nil {
|
||||
return nil, fmt.Errorf("load lifecycle_defs: %w", err)
|
||||
}
|
||||
for rows.Next() {
|
||||
var id, def string
|
||||
var states []string
|
||||
if err := rows.Scan(&id, &states, &def); err != nil {
|
||||
rows.Close()
|
||||
return nil, err
|
||||
}
|
||||
set := make(map[string]bool, len(states))
|
||||
for _, s := range states {
|
||||
set[s] = true
|
||||
}
|
||||
t.Lifecycles[id] = ontology.LifecycleInfo{States: set, DefaultState: def}
|
||||
}
|
||||
rows.Close()
|
||||
if rows.Err() != nil {
|
||||
return nil, rows.Err()
|
||||
}
|
||||
|
||||
return t, nil
|
||||
}
|
||||
|
||||
// ValidateCardinality checks all CURRENT edges against their relationship
|
||||
// type's declared cardinality. Runs inside the ingest transaction so a
|
||||
// violating seed rolls back atomically.
|
||||
func ValidateCardinality(ctx context.Context, tx pgx.Tx) error {
|
||||
// one-to-one / many-to-one: a source may have at most one outgoing
|
||||
// current edge of the type.
|
||||
rows, err := tx.Query(ctx, `
|
||||
SELECT r.type, se.slug, count(*)
|
||||
FROM relationships r
|
||||
JOIN relationship_types rt ON rt.name = r.type
|
||||
JOIN entities se ON se.id = r.source_id
|
||||
WHERE r.valid_to IS NULL AND rt.cardinality IN ('one-to-one','many-to-one')
|
||||
GROUP BY r.type, se.slug HAVING count(*) > 1`)
|
||||
if err != nil {
|
||||
return err
|
||||
}
|
||||
violations, err := collectViolations(rows, "source")
|
||||
if err != nil {
|
||||
return err
|
||||
}
|
||||
|
||||
// one-to-one / one-to-many: a target may have at most one incoming
|
||||
// current edge of the type.
|
||||
rows, err = tx.Query(ctx, `
|
||||
SELECT r.type, te.slug, count(*)
|
||||
FROM relationships r
|
||||
JOIN relationship_types rt ON rt.name = r.type
|
||||
JOIN entities te ON te.id = r.target_id
|
||||
WHERE r.valid_to IS NULL AND rt.cardinality IN ('one-to-one','one-to-many')
|
||||
GROUP BY r.type, te.slug HAVING count(*) > 1`)
|
||||
if err != nil {
|
||||
return err
|
||||
}
|
||||
v2, err := collectViolations(rows, "target")
|
||||
if err != nil {
|
||||
return err
|
||||
}
|
||||
violations = append(violations, v2...)
|
||||
|
||||
if len(violations) > 0 {
|
||||
return fmt.Errorf("cardinality violations: %v", violations)
|
||||
}
|
||||
return nil
|
||||
}
|
||||
|
||||
func collectViolations(rows pgx.Rows, side string) ([]string, error) {
|
||||
defer rows.Close()
|
||||
var out []string
|
||||
for rows.Next() {
|
||||
var relType, slug string
|
||||
var n int
|
||||
if err := rows.Scan(&relType, &slug, &n); err != nil {
|
||||
return nil, err
|
||||
}
|
||||
out = append(out, fmt.Sprintf("%s %s=%s (%d edges)", relType, side, slug, n))
|
||||
}
|
||||
return out, rows.Err()
|
||||
}
|
||||
Reference in New Issue
Block a user