Pivot to text-first column-stack workspace + merge-with-review across AI artifacts

Workspace
- Pivot from "set of open panes" to a Finder-style miller column stack:
  TopBar / LeftSidebar / [section → entity → entity ...] / pinned text editor.
  openPanesStore is now an ordered Column[] with pushFrom / closeFrom /
  setStack; only one top-level section is rooted at a time.
- New entity column panes: Term, Block, Association, Constraint,
  Requirement, Finding. Click-through navigation truncates deeper
  columns automatically.
- LeftSidebar surfaces a pending-count chip per section (single-glance
  navigation cue) and spins its analyze ↻ via SVG Spinner whenever the
  LLM is working — including server-initiated runs caught by the runs
  poll, not just user-triggered ones.

Analyze pipeline + persistence
- Unified `concepts` pass (taxonomy + glossary in one LLM call) replaces
  the two-pass setup. Server still accepts ?section=taxonomy|glossary
  and normalizes them for back-compat.
- model / requirements / detection (assumptions, risks, inconsistencies)
  + cross-layer validation rules (X1–X4: stale term link, unlinked
  formalism, undefined linked term, prose-only term).
- Persistence: NarrativeDocument, ModelSnapshot, ChangelogEntry,
  TaxonomyTerm, RequirementEntry, Finding, AnalysisRun. Re-runs MERGE
  instead of replace: gentle update on existing items, suggested on new,
  deprecated on missing — same idiom for every artifact kind. User pins
  preserve "kept" decisions across re-analyses.
- Migrations: pivot_text_first, add_requirement_linked_term,
  term_review_state, review_state_for_reqs_and_findings,
  add_term_definition_pinned.

Concept ↔ ontology integration
- linkedTermId on Block / Association / Constraint / Requirement.
  PromoteToolbar lets the user formalize a concept inline: + Block /
  + Association / + Constraint / + Requirement, all routed through
  applyOps so undo/redo and SSE work for free.
- decideElement op for in-canvas keep/discard on review-pending model
  elements.

User-authored definitions
- TermColumn definition is click-to-edit. Save (Cmd-Enter / blur),
  Cancel (Esc), Reset to AI suggestion when pinned.
- definitionPinned flag on TaxonomyTerm: future Analyze runs leave the
  user's text alone. setTermDefinition repo function + POST
  /api/projects/[id]/terms/[termId]/definition endpoint.
- mergeTaxonomySuggestion + applyGlossaryDefinitions both pin-aware.

UX/UI
- StatusChip: single component for all state idioms (suggested,
  deprecated, accepted, dismissed, resolved, severity, validation code,
  confidence, warn). Replaces 5+ ad-hoc badge classes.
- PaneControls (PaneViewTabs + PaneFilterChip): separates view-mode
  toggles from filter chips so toggling Pending no longer flips you off
  the current view.
- PaneEmpty: unified empty-state with title + hint + action.
- PaneDrawer: collapsible groups for Pending / Discarded review; cards
  group as Kept (top) → Pending (bottom drawer) → Discarded (Findings
  only, hidden when empty). Restore action recovers dismissed/resolved
  findings.
- ConceptCard unifies Tree and A–Z views in Concepts; only Tree parents
  carry the chevron (no empty placeholder offset).
- Type + spacing tokens (--text-xs..xl, --space-1..6, --lh-tight/ui/
  prose, --radius-*) replace every ad-hoc value.
- Buttons standardized to body sans 500 (was a mishmash of mono / display).
- Card shells unified across Concepts / Requirements / Findings.

Cleanup
- Removed: LeftRail, FindingsPanel, IssuesPanel, SocratesDock,
  ProposalCard, SlashMenu, SlashExtension, slashSuggestion,
  CanvasHeader, TaxonomyPane, GlossaryPane, TermDetail (popover; now
  TermColumn).
- Section ids in openPanesStore: dropped taxonomy/glossary, added
  concepts. localStorage migration runs on hydrate.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

apps/web/lib/sync/ModelStore.tsx

@@ -129,6 +129,7 @@ function anchorKey(anchor: ValidationIssue["anchor"]): string | null {
     case "constraint": return `constraint:${anchor.id}`;
     case "requirement": return `req:${anchor.id}`;
     case "property": return anchor.blockId;
+    case "term": return `term:${anchor.id}`;
     case "model": return null;
   }
 }

apps/web/lib/sync/applyOps.ts

@@ -203,6 +203,33 @@ function applyOne(model: SysMLModel, op: ModelOp, idMapping: Record<string, stri
         ),
       };
     }
+    case "decide-element": {
+      const realId = idMapping[op.element.id] ?? op.element.id;
+      const flip = <T extends { id: string; reviewStatus?: import("../sysml/model").ReviewStatus; reviewPinned?: boolean }>(arr: T[]): T[] =>
+        arr.map(e =>
+          e.id === realId
+            ? {
+                ...e,
+                reviewStatus: "accepted" as const,
+                reviewPinned: e.reviewStatus === "deprecated" ? true : !!e.reviewPinned,
+              }
+            : e
+        );
+      switch (op.element.kind) {
+        case "block":
+          assertExists(model.blocks, realId, "block");
+          return { ...model, blocks: flip(model.blocks) };
+        case "association":
+          assertExists(model.associations, realId, "association");
+          return { ...model, associations: flip(model.associations) };
+        case "constraint":
+          assertExists(model.constraints, realId, "constraint");
+          return { ...model, constraints: flip(model.constraints) };
+        case "requirement":
+          assertExists(model.requirements, realId, "requirement");
+          return { ...model, requirements: flip(model.requirements) };
+      }
+    }
   }
 }
 

apps/web/lib/sync/ops.ts

@@ -129,6 +129,22 @@ export interface RemoveRelationOp {
   relationIndex: number;
 }
 
+// ─── Review ops ──────────────────────────────────────────────────────────
+//
+// `decide-element` confirms an analyzer-suggested or analyzer-deprecated
+// model element. "Discard" simply uses the existing remove-* ops; for
+// "keep" we need a way to flip reviewStatus → accepted (and pin if it was
+// deprecated, so the next analyze pass doesn't re-deprecate the element).
+
+export type ReviewableElementKind = "block" | "association" | "constraint" | "requirement";
+
+export interface DecideElementOp {
+  kind: "decide-element";
+  element: { kind: ReviewableElementKind; id: string };
+  /** Only "keep" right now — discard goes through remove-*. */
+  decision: "keep";
+}
+
 // ─── Union ───────────────────────────────────────────────────────────────
 
 export type ModelOp =
@@ -148,7 +164,8 @@ export type ModelOp =
   | UpdateRequirementOp
   | RemoveRequirementOp
   | AddRelationOp
-  | RemoveRelationOp;
+  | RemoveRelationOp
+  | DecideElementOp;
 
 // ─── Op constructors (call sites stay readable) ─────────────────────────
 
@@ -220,6 +237,12 @@ export function removeRelation(requirementId: string, relationIndex: number): Re
   return { kind: "remove-relation", requirementId, relationIndex };
 }
 
+export function decideElement(
+  element: { kind: ReviewableElementKind; id: string }
+): DecideElementOp {
+  return { kind: "decide-element", element, decision: "keep" };
+}
+
 // ─── Helpers ─────────────────────────────────────────────────────────────
 
 let counter = 0;