Pivot to text-first column-stack workspace + merge-with-review across AI artifacts

Workspace
- Pivot from "set of open panes" to a Finder-style miller column stack:
  TopBar / LeftSidebar / [section → entity → entity ...] / pinned text editor.
  openPanesStore is now an ordered Column[] with pushFrom / closeFrom /
  setStack; only one top-level section is rooted at a time.
- New entity column panes: Term, Block, Association, Constraint,
  Requirement, Finding. Click-through navigation truncates deeper
  columns automatically.
- LeftSidebar surfaces a pending-count chip per section (single-glance
  navigation cue) and spins its analyze ↻ via SVG Spinner whenever the
  LLM is working — including server-initiated runs caught by the runs
  poll, not just user-triggered ones.

Analyze pipeline + persistence
- Unified `concepts` pass (taxonomy + glossary in one LLM call) replaces
  the two-pass setup. Server still accepts ?section=taxonomy|glossary
  and normalizes them for back-compat.
- model / requirements / detection (assumptions, risks, inconsistencies)
  + cross-layer validation rules (X1–X4: stale term link, unlinked
  formalism, undefined linked term, prose-only term).
- Persistence: NarrativeDocument, ModelSnapshot, ChangelogEntry,
  TaxonomyTerm, RequirementEntry, Finding, AnalysisRun. Re-runs MERGE
  instead of replace: gentle update on existing items, suggested on new,
  deprecated on missing — same idiom for every artifact kind. User pins
  preserve "kept" decisions across re-analyses.
- Migrations: pivot_text_first, add_requirement_linked_term,
  term_review_state, review_state_for_reqs_and_findings,
  add_term_definition_pinned.

Concept ↔ ontology integration
- linkedTermId on Block / Association / Constraint / Requirement.
  PromoteToolbar lets the user formalize a concept inline: + Block /
  + Association / + Constraint / + Requirement, all routed through
  applyOps so undo/redo and SSE work for free.
- decideElement op for in-canvas keep/discard on review-pending model
  elements.

User-authored definitions
- TermColumn definition is click-to-edit. Save (Cmd-Enter / blur),
  Cancel (Esc), Reset to AI suggestion when pinned.
- definitionPinned flag on TaxonomyTerm: future Analyze runs leave the
  user's text alone. setTermDefinition repo function + POST
  /api/projects/[id]/terms/[termId]/definition endpoint.
- mergeTaxonomySuggestion + applyGlossaryDefinitions both pin-aware.

UX/UI
- StatusChip: single component for all state idioms (suggested,
  deprecated, accepted, dismissed, resolved, severity, validation code,
  confidence, warn). Replaces 5+ ad-hoc badge classes.
- PaneControls (PaneViewTabs + PaneFilterChip): separates view-mode
  toggles from filter chips so toggling Pending no longer flips you off
  the current view.
- PaneEmpty: unified empty-state with title + hint + action.
- PaneDrawer: collapsible groups for Pending / Discarded review; cards
  group as Kept (top) → Pending (bottom drawer) → Discarded (Findings
  only, hidden when empty). Restore action recovers dismissed/resolved
  findings.
- ConceptCard unifies Tree and A–Z views in Concepts; only Tree parents
  carry the chevron (no empty placeholder offset).
- Type + spacing tokens (--text-xs..xl, --space-1..6, --lh-tight/ui/
  prose, --radius-*) replace every ad-hoc value.
- Buttons standardized to body sans 500 (was a mishmash of mono / display).
- Card shells unified across Concepts / Requirements / Findings.

Cleanup
- Removed: LeftRail, FindingsPanel, IssuesPanel, SocratesDock,
  ProposalCard, SlashMenu, SlashExtension, slashSuggestion,
  CanvasHeader, TaxonomyPane, GlossaryPane, TermDetail (popover; now
  TermColumn).
- Section ids in openPanesStore: dropped taxonomy/glossary, added
  concepts. localStorage migration runs on hydrate.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
This commit is contained in:
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You are deriving a **SysML model** from a product-thinking document and a known taxonomy of terms. The output backs a visual ontology canvas the user will edit.
## Inputs
- The prose document.
- The taxonomy term list — each label is a candidate block.
## What to produce
A lean SysML model with **blocks** (and optionally associations, constraints, requirements). Prefer a small, accurate model over a large, speculative one.
### Blocks
- Use the taxonomy as the *primary* source of block candidates. Most blocks should correspond to a taxonomy term.
- `kind`: `"system"` for the overall thing being designed, `"actor"` for human/external roles, `"block"` for everything else.
- Reuse the term's exact `label` as the block label.
- Set `linkedTermLabel` to the matching term so we can mark it as linked in the sidebar. Use the same spelling as the term list.
- A block is allowed without a taxonomy term only when the document clearly implies it but no term was extracted (rare).
### Associations
- Only include associations the document actually describes. No speculation.
- Verb phrase labels: `"guides"`, `"contains"`, `"reports_to"`.
- Optional `linkedTermLabel`: when the relationship itself is named in the
taxonomy as a concept (e.g. there's a term "Mentorship" and the association
is "Tutor mentors Student"), set it. Most associations don't have one.
### Constraints
- Optional `linkedTermLabel`: when the constraint is a concept on its own (e.g.
the term "Daily Cap" and the constraint is `sessions_per_day <= 3`), set it.
### Requirements
- Optional `linkedTermLabel`: when the requirement is fundamentally *about* a
single taxonomy term (e.g. REQ-001 is about Personalization), set it. This
is distinct from `satisfiedBy` (which links to blocks the requirement
formalizes against).
### Confidence
Score `confidence` ∈ [0, 1] honestly. Things straight from the prose: 0.8+. Reasonable inferences: 0.50.7. Speculation: leave it out.
## Output
```json
{
"systemOfInterestId": "tutor",
"blocks": [
{
"id": "tutor",
"label": "Tutor",
"kind": "system",
"linkedTermLabel": "Tutor",
"confidence": 0.95,
"properties": [
{ "name": "personality", "type": { "kind": "enum", "values": ["socratic", "encouraging"] } }
]
}
],
"associations": [
{ "id": "a1", "fromBlockId": "tutor", "toBlockId": "student", "label": "guides", "kind": "association", "confidence": 0.9 }
],
"constraints": [],
"requirements": [],
"overallConfidence": 0.8
}
```
Return ONLY the JSON object. No prose. No code fences.